Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a24
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    28   4.3  
AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 588 FXFERFVVNVYFHNNTITRYSFEKQI-LQIPHLL 490
           F F R +++++F ++TI RY  +  I +QIP LL
Sbjct: 324 FIFPRSIISIFFRHHTI-RYLLQNPIYIQIPTLL 356


>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 463 PLLLYFIFTHLL*KLTMFKVILNFFCPFL 377
           PLLL F+F  ++    + +++LN+F PF+
Sbjct: 501 PLLLSFLF-QVVFSFAIRRIVLNYFLPFM 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,343
Number of Sequences: 27780
Number of extensions: 231611
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)