Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a24
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   6.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 434 MCKNKIEQQGSFSC 475
           +C+ + E+QG++SC
Sbjct: 276 LCQRRFEEQGNYSC 289


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 579 ERFVVNVYFHNNTITRYSFE 520
           + FVVN+   +NTI R S E
Sbjct: 542 DEFVVNLKSGSNTIERNSHE 561


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 561 VYFHNNTITRYSFEKQILQIPHL 493
           +Y H   + RY  E+    +PHL
Sbjct: 260 LYSHKLLLNRYYLERLSNDLPHL 282


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 579 ERFVVNVYFHNNTITRYSFE 520
           + FVVN+   +NTI R S E
Sbjct: 542 DEFVVNLKSGSNTIERNSHE 561


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 579 ERFVVNVYFHNNTITRYSFE 520
           + FVVN+   +NTI R S E
Sbjct: 168 DEFVVNLKSGSNTIERNSHE 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,257
Number of Sequences: 438
Number of extensions: 2931
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)