Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1a22
(770 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 269 6e-72
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 269 6e-72
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 269 6e-72
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 269 6e-72
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 209 1e-53
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 31 6.0
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 269 bits (660), Expect = 6e-72
Identities = 122/152 (80%), Positives = 135/152 (88%)
Frame = +1
Query: 244 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 423
GISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 424 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 603
GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 604 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 699
GRKKGAKLT EE I+NKKRS+K +KY R+
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 269 bits (660), Expect = 6e-72
Identities = 122/152 (80%), Positives = 135/152 (88%)
Frame = +1
Query: 244 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 423
GISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 424 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 603
GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 604 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 699
GRKKGAKLT EE I+NKKRS+K +KY R+
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 269 bits (660), Expect = 6e-72
Identities = 122/152 (80%), Positives = 135/152 (88%)
Frame = +1
Query: 244 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 423
GISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 424 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 603
GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 604 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 699
GRKKGAKLT EE I+NKKRS+K +KY R+
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 269 bits (660), Expect = 6e-72
Identities = 122/152 (80%), Positives = 135/152 (88%)
Frame = +1
Query: 244 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 423
GISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 424 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 603
GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 604 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 699
GRKKGAKLT EE I+NKKRS+K +KY R+
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 209 bits (510), Expect = 1e-53
Identities = 105/152 (69%), Positives = 118/152 (77%)
Frame = +1
Query: 244 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 423
GISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG---------- 51
Query: 424 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 603
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 52 ---------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 101
Query: 604 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 699
GRKKGAKLT EE I+NKKRS+K +KY R+
Sbjct: 102 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 133
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 30.7 bits (66), Expect = 6.0
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 625 LTEAEEAIINKKRSQKTARKYLARQ 699
LT EE I+NKKRS+K +KY R+
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERK 25
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,292,538
Number of Sequences: 237096
Number of extensions: 2383279
Number of successful extensions: 4792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4792
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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