Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1a22
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 230 1e-60
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.69
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.69
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.69
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.69
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.69
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.69
U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical p... 29 2.8
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 29 2.8
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 28 6.4
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 28 6.4
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 8.5
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 8.5
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 230 bits (562), Expect = 1e-60
Identities = 105/152 (69%), Positives = 122/152 (80%)
Frame = +1
Query: 244 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 423
GISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD
Sbjct: 2 GISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLD 61
Query: 424 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 603
+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL
Sbjct: 62 SGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPL 121
Query: 604 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 699
RKK AKL+E + AI+NKKRS T +KY RQ
Sbjct: 122 ARKKNAKLSEEDNAILNKKRSHHTMKKYTERQ 153
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 409 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 513
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 409 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 513
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 409 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 513
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 409 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 513
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 409 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 513
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 409 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 513
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical
protein F08F8.2 protein.
Length = 550
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 221 LITMCCVQVLVGITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSEST 373
L T CC + ++G T + PVG P G+ VP+ T AL ST
Sbjct: 151 LATECCCENVIGYTPV----PVGVAGPLTLNGTSEIYVPMATTEGALIAST 197
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 29.5 bits (63), Expect = 2.8
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = -1
Query: 422 SRRSARYLVFP-PRERTEWIR*--GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SR 252
S+RS+ +L+F RT IR P A P S+F + + F P+++ S
Sbjct: 124 SQRSSTWLLFSIALIRTLIIRNPLNPKYEKLANPPTSFFTMICINLIFFPISIATYLGSD 183
Query: 251 LIPEHSTLLLIISTSQPDRIK*QFLLVSKKYKHNSLSDLKHS 126
+ ++ T S+ PD ++ +L VS YK N LK S
Sbjct: 184 ITSQNHT-----SSCDPDGVRFYYLTVSALYKQNDGRILKIS 220
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 356 ALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 496
++ E+TP + EI+ST VW V ++ K +S C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 182 FLLVSKKYKHNSLSDLKHSCFKKRFYKLLTLLRRFH*IYQIILWVNQLTHLSWVKK 15
FL+ K Y+ NS + FYK + L+ + I I++ VN W+ K
Sbjct: 25 FLVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNK 80
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 182 FLLVSKKYKHNSLSDLKHSCFKKRFYKLLTLLRRFH*IYQIILWVNQLTHLSWVKK 15
FL+ K Y+ NS + FYK + L+ + I I++ VN W+ K
Sbjct: 25 FLVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNK 80
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 512 TNSLLDALYTTSMIRVLRV 456
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 451 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 573
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,139
Number of Sequences: 27780
Number of extensions: 364954
Number of successful extensions: 1032
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -