Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a19
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    27   2.0  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.5  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   6.0  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   6.0  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.0  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   8.0  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -3

Query: 634 VRLENRRSHSASVINIVANRYRLVYRDPGFNSIREQREHDPSVVLKPVDYQRIHPA 467
           V L+ +RS  +  +NI A R   V  D    SIR +  H PSV+ K +   +I  A
Sbjct: 148 VVLDPKRSLESPYVNIGAFRTYPVGND---GSIRTKSRHHPSVLFKNLPSSKIEDA 200


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 44  LLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMD 208
           LL  +  G N    P  K G+ SAS++ + AW++  K  S   R   T  E   D
Sbjct: 496 LLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNKSRPTTTSTELKTD 550


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/61 (19%), Positives = 24/61 (39%)
 Frame = +2

Query: 476 NPLIVDWFEDYARVVFSLFADRVKTWVSINEPVSICDYVYNTGGMAPPIFEPHVAPYVCT 655
           NPL + W +++       F    +TW    + +  C   ++    A  +    + P +C 
Sbjct: 5   NPLFLQWIQEWMEESTRRFPKSYQTWRKAYDSMKSCPITFHRPSQALAL--KGIGPTICA 62

Query: 656 K 658
           K
Sbjct: 63  K 63


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 368  YYNNLIDGLLDKGIEPLVTIFHWD---LPQSLQDLGGWMNPLIVDWFE 502
            YY+   DG +D  I+P +  F +D   + +++++L   ++  +  WF+
Sbjct: 4665 YYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWFQ 4712


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 505 VLKPVDYQRIHPATKILQTL 446
           VLKPV Y++I    KILQ L
Sbjct: 73  VLKPVKYKKIKREIKILQNL 92


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 213 VRSIIASGLVWTSRSHMLSPLSLTFQAPS-TWYEAD 109
           +  +I++G  W++ S +   ++  F+APS   YEAD
Sbjct: 74  IMGVISTGFAWSAYSLVKKYIAPMFRAPSQNAYEAD 109


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 53  SVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIW 169
           S  +G++L+F        AS+S  +E     SDK  SIW
Sbjct: 298 SSCFGNSLSFAASNGVDGASSSQVLENILVASDKEFSIW 336


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 194 EAIM-DLTNGDVTCDSYHLWERDIEMATELGLHFYRFSLSWPRLM 325
           EAIM DL   D+  D     E D+ +A     HF+ FS  +PR +
Sbjct: 299 EAIMSDLNFEDI--DEKKFEEIDLRLACCFESHFFAFSQHYPRYL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,332
Number of Sequences: 5004
Number of extensions: 66486
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)