Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1a16
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0477 - 18188280-18188490,18188572-18188748,18189141-181893... 30 1.8
02_04_0091 + 19651828-19652086,19652199-19652269,19652404-196525... 29 3.1
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 29 4.1
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 29 4.1
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 29 4.1
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 29 4.1
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 29 4.1
03_02_0992 + 13049871-13050449 29 5.5
02_05_0814 - 31970558-31971126,31971242-31971413 29 5.5
11_06_0726 - 26707605-26708036 28 7.2
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 28 7.2
>10_08_0477 -
18188280-18188490,18188572-18188748,18189141-18189304,
18189667-18189720,18190572-18191054
Length = 362
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 328 HEPISGSTDHHSACLRGVTGRRGGKQHRTRIRPRISGSGR 209
H P+S S+ HH QHR R R R+ G GR
Sbjct: 4 HLPVSPSSSHHLLDAAPTPASPAHAQHRRRRRRRMCGGGR 43
>02_04_0091 +
19651828-19652086,19652199-19652269,19652404-19652505,
19652626-19652730,19652865-19653000,19654178-19654287,
19654381-19654461
Length = 287
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 305 RPPLRLSARGHRPARG 258
RPPL ARG RPARG
Sbjct: 10 RPPLAAGARGRRPARG 25
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 315 PEAPTTTPLVCEGSPAGEGGNSTGP 241
P AP T V +GSP G G + GP
Sbjct: 110 PRAPATAETVPQGSPRGPGVRTVGP 134
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 227 PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKAYG 358
P N GP + P T+ GA GY PPG QG G
Sbjct: 275 PPPNAGPPNYQPHAPNPQGYTNYQQGGAPGYQGGPPGYQGSNQG 318
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 327 TNPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALG 226
T YPE P PLV +G G G+S G F++G
Sbjct: 259 TKLYPEEPRYLPLV-KGGGGGGDGDSDGGRFSIG 291
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +2
Query: 209 SAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG---FVPPGSQGKAYGR 361
S A A P L PP PA P Q GV G +G G V P +G R
Sbjct: 92 SVCAEGEAAAQQPTLAPP-PAQQPQQNQGVGFGGTGAGAATTVSPAPRGTTMAR 144
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 227 PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKAYGR*M 367
P A GP +FPP+ G P G S G++ P YG+ M
Sbjct: 552 PTAPLGPPMFPPAYGGQP-MVYNAQPGPSPQGYMHPAGPQLQYGQQM 597
>03_02_0992 + 13049871-13050449
Length = 192
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 327 TNPYPEAPTTTPLVCEGSPAGEGGNS 250
T+P A T TPL GS +GEGG+S
Sbjct: 99 TSPPLHAATVTPLRPAGSRSGEGGSS 124
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = -3
Query: 345 PWEPGGTNPYPEAP---TTTPLVCEGSPAGEGGNSTGP 241
P P T PYP P TTP SPA GG P
Sbjct: 167 PSTPMPTTPYPSTPMTTPTTPYTTPTSPACSGGAGATP 204
>11_06_0726 - 26707605-26708036
Length = 143
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 333 PAPKVKPTDDEWPSQIVVRTNLSTRAVTV 419
P P ++P D +WP+Q V R + R V +
Sbjct: 93 PLPSLQPHDFQWPAQAVEREEEARRRVVL 121
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 287 SARGHRPARGETAPDQDSPSDLWQRP 210
S R RPA E APD ++ S+ W P
Sbjct: 192 SVRCMRPANHEAAPDTETDSERWAPP 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,197,317
Number of Sequences: 37544
Number of extensions: 444855
Number of successful extensions: 1779
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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