Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a14
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    56   5e-10
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 55.6 bits (128), Expect = 5e-10
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
 Frame = +3

Query: 195 ARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHC---WRTRSAQGR 365
           +RIVGG+  G+   P +A +  T   G   +CGA+++S    +TAAHC     T      
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGM--ICGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 366 XXXXXXXXXXXXXXXXRINTNNVQMHGSYNM----DNLHNDVAMI-IHGRVGYTNVIQPI 530
                             + N V +H  Y++    D   ND+A++     + + + + P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 531 FLPPSHLLNNQFVGTWAWAAGYGRTSDASGSNTRKHQVALQVITNADCARTFGNGVIAST 710
            LP  H L++ F G+     G+G TS     +    +  L ++T  +C + +GN ++ + 
Sbjct: 277 CLPFQHFLDS-FAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGN-IMVNA 334

Query: 711 LCVNTQGGRSTCR 749
           +C   + G+  C+
Sbjct: 335 MCAYAK-GKDACQ 346


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 521 PADLPAPLTSPQQPIRG 571
           P   P+P  SPQ P RG
Sbjct: 21  PGPQPSPHQSPQAPQRG 37


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 350 PGPPAVSRGHGASVAQQ 300
           PGPP V   HG    +Q
Sbjct: 332 PGPPGVPGDHGDHAPKQ 348


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 350 PGPPAVSRGHGASVAQQ 300
           PGPP V   HG    +Q
Sbjct: 332 PGPPGVPGDHGDHAPKQ 348


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 434 NIVSVNSESTSEELSGAETQLKRASLSA 351
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 301 NVEETNSEETHQKDGSSDSVIKRTVVSS 328


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 434 NIVSVNSESTSEELSGAETQLKRASLSA 351
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 216 NVEETNSEETHQKDGSSDSVIKRTVVSS 243


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 434 NIVSVNSESTSEELSGAETQLKRASLSA 351
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 535 NVEETNSEETHQKDGSSDSVIKRTVVSS 562


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 350 PGPPAVSRGHGASVAQQ 300
           PGPP V   HG    +Q
Sbjct: 271 PGPPGVPGDHGDHAPKQ 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,362
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)