Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a11
         (769 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...    48   2e-05
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...    48   2e-05
DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...    47   3e-05
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...    41   0.002
BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    31   2.3  
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    31   2.3  

>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 661 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPP 765
           A K Q+K++KG  G R RKIR +VHFRRP T + P
Sbjct: 134 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLP 168


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 661 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPP 765
           A K Q+K++KG  G R RKIR +VHFRRP T + P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLP 176


>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 661 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPP 765
           A K Q+K++KG  G R RKIR +VHFRRP T + P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRANVHFRRPTTLKLP 176


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +1

Query: 661 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPP 765
           A K Q+K++K   G R RKIR +VHFRRP T + P
Sbjct: 135 AKKVQKKIIKA-FGTRARKIRTNVHFRRPTTLKLP 168


>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 699 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 607
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 699 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 607
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.314    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,329
Number of Sequences: 53049
Number of extensions: 210223
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)