Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1a06
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.64
03_06_0333 - 33204345-33204803 30 1.5
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 2.6
05_01_0545 - 4756266-4757510 29 2.6
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 3.4
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36... 29 4.5
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 4.5
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 4.5
12_02_1275 - 27482784-27483272 28 6.0
06_03_0685 - 23499779-23500204 28 6.0
04_03_0489 + 16503325-16503747,16503916-16503978 28 6.0
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 6.0
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 164 WKWCGLRRDQTGREG 208
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>03_06_0333 - 33204345-33204803
Length = 152
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +3
Query: 282 CFSLCLGAGPLWWS*CPCSRLCTARRGDRRGCEPRYPGHPQPRRQSR 422
C SL G L C C+R C R RG PR+ P Q R
Sbjct: 57 CCSLLDGLVDLDAVVCLCTRPCLLLRAQHRGARPRWAASPPAATQRR 103
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 138 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 302
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 333 CSRLCTARRGDRRGCEPRYPGHPQPRRQSRLAKCP 437
C+R+ A GDRR C P P PR+ + P
Sbjct: 332 CARVVPAADGDRRNCLPNRPYQRTPRQCAAFYAAP 366
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 259 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 167
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>08_01_0052 +
361505-361969,362270-362348,362816-362880,363069-363236,
363731-364171
Length = 405
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 330 PCSRLCTARRGDRRGCEPRYPGHPQPRRQSRLAKCPAMVKLQLF 461
P +R+ A + EP PG Q ++Q R +C +V+ +L+
Sbjct: 316 PVARIGEAMQKQSISSEPENPGQGQGKQQRRCKECDVLVEDKLY 359
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -2
Query: 372 PAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPT-ELSACCRERSETPRHRNKPSRP 196
P H R IR + + P R+ R P + + R RS PR R P R
Sbjct: 297 PIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRR 356
Query: 195 VWS 187
+WS
Sbjct: 357 MWS 359
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 357 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 235
SG + S+ IRT+ RP T + R PK +SA R +
Sbjct: 26 SGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNK 66
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 161 QWKWCGLRRDQTGREG 208
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 181 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 306
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 241 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAH 339
PAA+A L RLRTP+ + C G P V H
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPH 81
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 351 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 247
R RA S+D R T + RP T R P P AC
Sbjct: 1024 RRRAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,187
Number of Sequences: 37544
Number of extensions: 312857
Number of successful extensions: 1070
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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