Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a05
         (1106 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.39 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 210 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 320
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.39
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 438 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 548
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 666 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 755
           +DT+   K KI  K  I PD + L+   KQ
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 845 RSSWKTLTXKTSLWEVE 895
           ++  KTL  +T +WEVE
Sbjct: 231 KNGMKTLLSETDIWEVE 247


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 98  IIVRHTTDKAKLLYLLDHHANLCEDSNWQDHYI 196
           ++  HT+D+ K   +  ++ N    + ++D+YI
Sbjct: 118 LVPNHTSDQHKWFQMSINNTNNNNTNKYKDYYI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,881
Number of Sequences: 438
Number of extensions: 6759
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37234809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)