Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a02
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    29   0.77 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   5.4  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    26   7.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.5  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 454 LIVLRISKLLFLKREKWMTIFSTYKGYFIFFFLSKNNVCF 335
           L+V+     +  K   W T+F+T+ G   FFF S  ++ +
Sbjct: 73  LVVVPFYSTIIKKLTPWFTVFTTWVGEEYFFFASTLSILY 112


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +3

Query: 258 KYLVDSGYDESEDKERENITKRSKRLKHTLFFERKKNMKYPLYVEKIVIHFSRLRKSNFE 437
           ++     Y E+  +ER+ + +  K +  +L    +++ + P Y+ K +  FSR+ ++ + 
Sbjct: 121 QFKAQRAYRENRARERQLLLENGKPIPASL----EEDAELPEYLTKSLKDFSRVSENPYH 176

Query: 438 MRSTIKLCHLQ 470
           + S   + HLQ
Sbjct: 177 ITSVPNVEHLQ 187


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 333 LKHTLFFERKKNMKYPLYVEKIVIHFSRLRKSNFEMRSTIKLCHLQTRIKISIISTDQTT 512
           L+H L    +      L+ +KI+ +FSRL    F  R+ I   H   R++ S  + D   
Sbjct: 263 LQHNLLQNFEFENPIKLHFDKIIPYFSRLTVLTFSNRAFIFPDHTFPRLQQS--AEDFLY 320

Query: 513 EEQYFF 530
             Q+FF
Sbjct: 321 HLQFFF 326


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -3

Query: 299 FIFGFVVP*VYKIF*RLSNRSRRTYFKA--PRRSPVT--YTAVKGLKYISN*SMNVAICS 132
           F+ G V      ++  L  R  RT  KA      P +  Y A+KGLK +   ++ V +  
Sbjct: 310 FLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLVVP 369

Query: 131 LIRTYKL 111
            I+ Y++
Sbjct: 370 NIKVYEV 376


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 399  VIHFSRLRKSNFEMRST-IKLCHLQTRIKISIISTDQTTEEQYF 527
            V  +S+LR  N     T +KLC L     +S +S+  T + +Y+
Sbjct: 1106 VYPYSKLRGPNVMGTITALKLCSLGKGKSLSFVSSTSTVDTEYY 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,540
Number of Sequences: 5004
Number of extensions: 57003
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)