Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a02
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1672 - 28522548-28522846,28522940-28522996,28523087-285231...    31   1.1  
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    31   1.4  

>07_03_1672 -
           28522548-28522846,28522940-28522996,28523087-28523143,
           28523234-28523519
          Length = 232

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -1

Query: 364 FFLSKNNVCFSLLDLLVIFSRSLSSDSSYPESTRYFSALVTEVDVLTLKRRVGHR 200
           FFL    VCF L+ L+VI +RS    +   +     ++LV  + VL L   +G+R
Sbjct: 175 FFLGDFGVCFILVGLIVIIARSQHERTQDDKGLWAGTSLVFYILVLLLAAFIGNR 229


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 228 STSTSVTKALKYLVDSGYDESE-DKERENITKRSKRLKHTLFFERKKNMKYPLYV 389
           +T++++T  +++L D+     E  +E +NI KR   L   + +E  K+MK+  +V
Sbjct: 212 TTASAITAVVRFLTDNPEALQELAEEHDNIQKRRVDLNSEITWEEYKSMKFTSHV 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,353
Number of Sequences: 37544
Number of extensions: 283609
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)