Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a02
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    32   0.55 
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    30   1.7  
Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81097-6|CAB03173.1|  176|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    28   6.7  
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   8.9  
U41107-5|AAN39671.1|  543|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    28   8.9  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   8.9  

>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/64 (20%), Positives = 34/64 (53%)
 Frame = -1

Query: 397 IFSTYKGYFIFFFLSKNNVCFSLLDLLVIFSRSLSSDSSYPESTRYFSALVTEVDVLTLK 218
           +F+++  + +   L K  +C  +LD++++F  S  +D+ + +   +   +V ++ +    
Sbjct: 10  VFASFWRFVVTIDLQKEGICPPVLDIIILFDTSGGNDTVFEQQKNWTIKIVRDLPIHEDA 69

Query: 217 RRVG 206
            RVG
Sbjct: 70  VRVG 73


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
            protein F25G6.2 protein.
          Length = 1143

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 219  FKVSTSTSVTKALKYLVDSGYDESEDKERENITKRSKRLK 338
            FK+  ST  T+  K + +   +E  DKEREN  +R KRL+
Sbjct: 1080 FKIIYSTLATQQQKNMDEKIKEELHDKEREN-RERDKRLR 1118


>Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical
           protein W10G6.2b protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -2

Query: 531 KKNTALPLFGRSI*LISLFEFVSDII*LYFAFQN----YFFLSEKNG*QFFLHTKDISYF 364
           KKN    +      LI+ F+    ++ L+F+FQN    YF L   NG + F H +   +F
Sbjct: 173 KKNEVKHVMAERNVLINNFKHPF-LVSLHFSFQNKEKLYFVLDHLNGGELFSHLQREKHF 231

Query: 363 SSFQKIMYVLAF*IS**YFHALYLRIRRTLSLQDIL 256
           S  +   Y      +  Y H   + I R L  +++L
Sbjct: 232 SESRSRFYAAEIACALGYLHEKNI-IYRDLKPENLL 266


>Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical
           protein W10G6.2a protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -2

Query: 531 KKNTALPLFGRSI*LISLFEFVSDII*LYFAFQN----YFFLSEKNG*QFFLHTKDISYF 364
           KKN    +      LI+ F+    ++ L+F+FQN    YF L   NG + F H +   +F
Sbjct: 163 KKNEVKHVMAERNVLINNFKHPF-LVSLHFSFQNKEKLYFVLDHLNGGELFSHLQREKHF 221

Query: 363 SSFQKIMYVLAF*IS**YFHALYLRIRRTLSLQDIL 256
           S  +   Y      +  Y H   + I R L  +++L
Sbjct: 222 SESRSRFYAAEIACALGYLHEKNI-IYRDLKPENLL 256


>Z81097-6|CAB03173.1|  176|Caenorhabditis elegans Hypothetical
           protein K07A1.13 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 489 LISLFEFVSDII*LYFAFQNYFFLSEKNG*QFFLHTKDISYFSSFQKIMYVLAF 328
           ++ + E +   + L F+ QNY+F ++     FF+  +  S F  F  + Y  AF
Sbjct: 38  ILGIAELIVSFLFLIFS-QNYYFFAQLGLQLFFMALESYSLFVGFLVVAYAGAF 90


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 273 SGYDESEDKERENITKRSKRLKHTLFFERKKNMKYPLYVEKI 398
           S Y+   DK R  + + SK +++ LF+E+ +   + +  EKI
Sbjct: 107 SKYEMKGDKYRRELYRASKTMEYELFYEKVRMEVFCVMKEKI 148


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
            protein M116.5 protein.
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = +3

Query: 135  AYGNVHRLIRNVL*PFD-CRVGHR*PTRRFKVSTSTSVTKALKYLVDSGYDESEDKEREN 311
            AY +V  LI +     D C   +R    + +    T+  + LK           +K  EN
Sbjct: 745  AYSDVVELISDKEGLIDRCNASNRIAHPQTETEKITNEIELLKETCSCCTPYQIEKISEN 804

Query: 312  ITKRSKRLKHTLFFERKKNMKYPLYVEKIVIHFSRLRKSNFEMRSTIK 455
              +RSK      +F +K++ K   +  KI I  + +   NF+ +  +K
Sbjct: 805  YYRRSKSNFRGYYFSKKQSKKQCFFFSKIRIIKNFMTAQNFKKKILLK 852


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 DSGYDESEDKERENITKRSKR 332
           DS YD   D+ERE   +RSKR
Sbjct: 386 DSVYDSEADRERERERRRSKR 406


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 DSGYDESEDKERENITKRSKR 332
           DS YD   D+ERE   +RSKR
Sbjct: 386 DSVYDSEADRERERERRRSKR 406


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 DSGYDESEDKERENITKRSKR 332
           DS YD   D+ERE   +RSKR
Sbjct: 380 DSVYDSEADRERERERRRSKR 400


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 454 LIVLRISKLLFLKREKWMTIFSTYKGYFIFFFLSKNNVCFSLLDLLVIFSRSLSSDSSYP 275
           LI+ +++ +L    E+ + + S   G  IF    + NVCFSLL    I+++      +  
Sbjct: 283 LIIDQVNNILSTFAEEDVPVLSPLNGNVIFSS-GRYNVCFSLLSFSNIYAKQHGDSFNSK 341

Query: 274 ESTR 263
           E  R
Sbjct: 342 EFAR 345


>U41107-5|AAN39671.1|  543|Caenorhabditis elegans Hypothetical
           protein F55C12.5c protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 DSGYDESEDKERENITKRSKRLKHTLFFERKKN 368
           DSG  ESE  +   + +++K+  H L   RKKN
Sbjct: 93  DSGKKESEQSKIGALLEKAKKKTHKLVSSRKKN 125


>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 DSGYDESEDKERENITKRSKRLKHTLFFERKKN 368
           DSG  ESE  +   + +++K+  H L   RKKN
Sbjct: 44  DSGKKESEQSKIGALLEKAKKKTHKLVSSRKKN 76


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 DSGYDESEDKERENITKRSKRLKHTLFFERKKN 368
           DSG  ESE  +   + +++K+  H L   RKKN
Sbjct: 93  DSGKKESEQSKIGALLEKAKKKTHKLVSSRKKN 125


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 454 LIVLRISKLLFLKREKWMTIFSTYKGYFIFFFLSKNNVCFSLLDLLVIFSRSLSSDSSYP 275
           LI+ +++ +L    E+ + + S   G  IF    + NVCFSLL    I+++      +  
Sbjct: 158 LIIDQVNNILSTFAEEDVPVLSPLNGNVIFSS-GRYNVCFSLLSFSNIYAKQHGDSFNSK 216

Query: 274 ESTR 263
           E  R
Sbjct: 217 EFAR 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,727,518
Number of Sequences: 27780
Number of extensions: 309256
Number of successful extensions: 797
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)