Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a02
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 264 LVDSGYDESEDKERENITKRSKRLKHTLFFERKKNMK 374
           +VD GYD S+ K+ + I    K L+      +K+N+K
Sbjct: 77  MVDFGYDISDFKDVDPIFGTIKDLEDLTAEAKKQNLK 113


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 231 TSTSVTKALKYLVDSGYDESEDKERENITK 320
           TSTS    LK  +   YD     E++N TK
Sbjct: 32  TSTSALYRLKLYLFCDYDRDIIPEQKNATK 61


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 286 NPKIKSVKILLRDLKG*NIHYFLK 357
           N K+K ++I+L D+K  N  +  K
Sbjct: 208 NVKLKELRIILEDIKHINTRHNTK 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,090
Number of Sequences: 438
Number of extensions: 4138
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)