Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19p17
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 75 8e-15
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 30 0.40
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 29 0.94
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 2.9
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 3.8
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.8
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 26 5.0
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 8.7
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 75.4 bits (177), Expect = 8e-15
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 20/156 (12%)
Frame = +2
Query: 341 LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY-------- 496
L K++ PG +LG++ ++ + + VS+P L G V +IS+ + L++
Sbjct: 101 LRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNA 160
Query: 497 ---VEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTM--------LTTMPQHVN-SGKRH 640
ED ++ +L ++K GQ++ VSV L NT L+ PQ N S
Sbjct: 161 ATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEA 220
Query: 641 TEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLPK 748
+ G++ QA VSS+EDHG V D+GI N T FL K
Sbjct: 221 ADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSK 256
Score = 31.5 bits (68), Expect = 0.13
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +2
Query: 350 KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEA-YVEDKTEKVRE 526
++L PG L+G+V +V++ + +P + G V + + Y+ L E + + V
Sbjct: 1048 ENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCV 1107
Query: 527 LSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYV 706
LS + P + +A+S + + + +NS ++K G I + V +V + G
Sbjct: 1108 LS-VDVPNRKVALSARNSRTQSQPVEIKDKEINS---VDDLKIGDICRGFVCNVANQGLF 1163
Query: 707 MDLG 718
+ +G
Sbjct: 1164 VTIG 1167
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 669 WNMAPFLISVCRFPLFTC*GIVVSMVLPGASSTTLTAMY 553
W + F+ +V FP+F C I+V +LP S T +++
Sbjct: 568 WTVIYFIFNV-PFPVFLCYDILVETILPAGSQTLTDSVF 605
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 287 DEAQDYLKTHKLNNNLIFLSSKSLRP-GINLLGRVIHVSDVKIKVSMPCKLLGNVMACHI 463
DEA+ ++ T L N++ + L P G++ LG V+H + I + LG V HI
Sbjct: 227 DEAKQFVVTRLLQRNVV-IELLDLAPNGVSFLGNVLHPAG-NIATFLLSSGLGRVADNHI 284
Query: 464 S 466
S
Sbjct: 285 S 285
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 458 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQ 616
H+ K L+AY E+ E+ R+ +F P +EL LT P+
Sbjct: 477 HLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIELEDRTLTLTVTPE 529
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 284 SDEAQDYLKTHKLNNNLIFLSSKSLRPGIN 373
+DEA L + NN IFL +LRP ++
Sbjct: 911 ADEASRQLVWQAIENNEIFLDPHTLRPNVD 940
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 389 IHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQ 553
+H + M +L G +M + Y++ +ED TE + L F+PGQ
Sbjct: 41 VHAIVTEETAPMALRLSGQLML-GVVRIYSRKARYLLEDCTEALMRLKMSFQPGQ 94
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 305 LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 472
L+ HK +FL S + P I LL + VS + +S+ +L N++A H++ S
Sbjct: 142 LQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMS 197
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 470 SYNKLLEAYVEDKTEKVRELSQMFKPGQYI 559
S K E E EK+ + Q+FKPGQ +
Sbjct: 50 SLRKSAETANEKFIEKINKEHQLFKPGQIV 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,718
Number of Sequences: 5004
Number of extensions: 54851
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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