Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19p17
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.11 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.57 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 659 AIFQAAVSSVEDHGYVMDLGIP 724
           ++ QAA SSV D  Y+++LG P
Sbjct: 408 SVIQAATSSVSDDLYLLELGFP 429


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 75  K*AEQGVLKNHTGIKRKRRWQTRKNT 152
           K A +   KN TG++R R W +  NT
Sbjct: 343 KLARKQFQKNTTGLERSRSWSSLDNT 368


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 335 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 451
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 335 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 451
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 IFLSSKSLRPGINLLGRVIHVSD 403
           IFLS+KSLR   NL    + +SD
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISD 64


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 669 KQQCHQLKITGM*WTSAY 722
           K+ C+QL I  + W SA+
Sbjct: 498 KRGCYQLAINHIRWNSAF 515


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 669 KQQCHQLKITGM*WTSAY 722
           K+ C+QL I  + W SA+
Sbjct: 588 KRGCYQLAINHIRWNSAF 605


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  RLHSNVFFNKQKLN*AKTSIK*AEQGVLKNHTGIKRKRRWQTRKNTFREVER 170
           R +  ++  K+K    KTS K   +   +     K +R ++  + T RE  R
Sbjct: 17  RQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  RLHSNVFFNKQKLN*AKTSIK*AEQGVLKNHTGIKRKRRWQTRKNTFREVER 170
           R +  ++  K+K    KTS K   +   +     K +R ++  + T RE  R
Sbjct: 17  RQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  RLHSNVFFNKQKLN*AKTSIK*AEQGVLKNHTGIKRKRRWQTRKNTFREVER 170
           R +  ++  K+K    KTS K   +   +     K +R ++  + T RE  R
Sbjct: 17  RQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  RLHSNVFFNKQKLN*AKTSIK*AEQGVLKNHTGIKRKRRWQTRKNTFREVER 170
           R +  ++  K+K    KTS K   +   +     K +R ++  + T RE  R
Sbjct: 17  RQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 666 NMAPFLISVCRFPL 625
           N+ P+L+S+C F L
Sbjct: 3   NVVPWLLSICLFGL 16


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 146 EYFPRGGKKPT 178
           E FPRGG  PT
Sbjct: 148 ESFPRGGSLPT 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,665
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)