Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19p16
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    29   0.84 
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   7.8  

>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 401 P*GENTCSGGLVPNISSSRSLGVLSP*DINTCTCR 297
           P   N+C  G+ PN S    +  L    +N C C+
Sbjct: 365 PYSYNSCDAGITPNQSDPSGISYLGGQRLNQCVCK 399


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 55  HDFVCFFLLIVGIMVTLITICT 120
           H F CFFLL   +M+ ++  C+
Sbjct: 22  HSFHCFFLLCFTVMLCVVQQCS 43


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 283 EVTILRQVHVLMSHGERTPS 342
           E   ++QVH+L  HG R P+
Sbjct: 56  ESCAIKQVHLLQRHGSRNPT 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,331
Number of Sequences: 5004
Number of extensions: 55458
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)