Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19p14
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.51 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.8  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   6.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   6.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 364 PLVDSLGGNGVAHVTSWPAPSKASTIPLP 278
           P+  S+GG+G     S   P+K+ST P P
Sbjct: 46  PVSFSMGGHGSLLSPSGNTPNKSSTSPYP 74


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 684 PLLFTTPQPPWA 719
           P + TTP+P WA
Sbjct: 402 PTISTTPRPEWA 413


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 118 IISQNKRCQCYYYFH 74
           ++++N+R + +YY H
Sbjct: 222 VVAKNRRGELFYYMH 236


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 118 IISQNKRCQCYYYFH 74
           I+ +N+R + +YY H
Sbjct: 222 IVDKNRRGEIFYYMH 236


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 73  NGNNNNIDIVYFV 111
           NGNNN  D+V +V
Sbjct: 24  NGNNNVTDLVEYV 36


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 217 DVTTHTKKSSNWRH 176
           D+TTH    S+W H
Sbjct: 277 DLTTHVMLLSDWMH 290


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 217 DVTTHTKKSSNWRH 176
           D+TTH    S+W H
Sbjct: 277 DLTTHVMLLSDWMH 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,861
Number of Sequences: 336
Number of extensions: 3875
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)