Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19p14
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 1.0
07_03_0425 - 18070607-18070712,18071771-18072744 31 1.4
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 31 1.4
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 30 1.8
04_01_0020 + 307110-307809,308412-308476,309245-309544 30 1.8
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 30 2.4
01_01_0942 + 7428384-7429536,7429623-7430335 29 4.1
01_01_0244 - 2005152-2005649,2006186-2006254 29 4.1
07_03_0418 + 17979504-17980964 29 5.5
07_03_0415 + 17920383-17921843 29 5.5
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 28 9.6
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 367 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 269
R +V LGG G + PAP+ AST PLP L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 216 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 329
+A A HVL VFP P++ H + LLGAG VT+
Sbjct: 4 AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 557 GLRDDRVVFPADDRLLQRWYREGQPRDIGSEGPD 456
G + VV ADD + RWY +GQ D EG D
Sbjct: 93 GAEAESVVVFADDAAVVRWYSDGQAVDPRYEGDD 126
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 449 RVDQDLRCQYHEAVPLGTSAAAGDRQRE---IRRGRHGVLLQRCRGGLRGS----TSSAL 607
RV+ D R Y G +A + RE +R RHGV+ R G +GS S
Sbjct: 104 RVENDQRRAYSHGQASGNTAESHGPNREFRVVRDSRHGVVENRPELGHKGSPNVKVSDRS 163
Query: 608 DPVVQRLHNAP 640
PVVQ N P
Sbjct: 164 VPVVQTGRNHP 174
>04_01_0020 + 307110-307809,308412-308476,309245-309544
Length = 354
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 213 TSARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVT 326
T RA ++ F +P ++ G++DAL G GH +T
Sbjct: 13 TCIRALELIFTFVVPMTLKATIKLGLLDALTGGGHALT 50
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 539 RGRHGVLLQRCRGGLRGSTSSALDPVVQRLHNAPLGSHHR*GA 667
R H LLQR GG+ G S++ P + RL A + R GA
Sbjct: 38 RALHAALLQRGGGGVGGGASASRSPAIIRLPPAASPALSRAGA 80
>01_01_0942 + 7428384-7429536,7429623-7430335
Length = 621
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 644 QVGHYGDAGQQDPGHLKYCPVARLGIVEEGLRDDRVVFPADDR 516
+VG GDAG D G +K + LG + E L + +F A R
Sbjct: 208 EVGAGGDAGDDDGGRIKPQMLGYLGNLGEHLSNSLAIFAARGR 250
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 367 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 269
R +V LGG G + PAP+ AS PLP L
Sbjct: 92 RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124
>07_03_0418 + 17979504-17980964
Length = 486
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 216 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 329
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>07_03_0415 + 17920383-17921843
Length = 486
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 216 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 329
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 397 EAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKASTIPLP 278
+ V L PL+D GG G A TS A + A+ P P
Sbjct: 204 DVVGLAPCALPPLMDVSGGGGGAGTTSLSATAGAAAAPPP 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,287,243
Number of Sequences: 37544
Number of extensions: 505666
Number of successful extensions: 1605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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