Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19p13
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 62 1e-10
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 6e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 2e-07
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 49 6e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 4e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 7e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 7e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 4e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 37 0.002
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 36 0.004
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.008
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.013
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.017
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 34 0.017
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.12
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 31 0.12
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.21
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.38
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.50
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.66
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.66
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.87
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.1
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.5
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 3.5
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 4.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 6.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 6.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 61.7 bits (143), Expect = 1e-10
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +3
Query: 375 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLGTADVVFERKAD 551
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS G A ++F R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 552 AVKAMKQYNGVPLDG-RAMNIQLATSEINTLRPEARNRIGGASVGGTIRNN 701
A +A +QY G +DG R M +++ L A ++ T N
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKN 159
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 396 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 575
+L VSN+ F ++D D+K +F FG ++ + D RS G + + A A+++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 576 NGVPLDGRAMNIQLATSEINT 638
NG L GR M + L + T
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTT 421
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 578
+ V NL + SD ++ +LF++ G + A + Y+ +GRS G V FE + DA ++++ N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 579 GVPLDGRAMNIQLA 620
G GR + + A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 414 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 593
L + V D+K+LF + G + A + ++ GRS G VV +A+ A++ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 594 GRAMNIQL 617
GR + ++L
Sbjct: 250 GRTLEVRL 257
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 49.2 bits (112), Expect = 6e-07
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Frame = +3
Query: 228 SNRSGGVQRGRNRGGITKSTNYSRGDVNST-----WKHDMFN--DFGERKLQRNSGTITT 386
S R G R + +T + + NS+ W+HD+ D R +
Sbjct: 23 SRRRGSQNRISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSE 82
Query: 387 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 566
+ V NL + V + D+ LF F ++ ++YDR+GRS G+ DV FE DA A
Sbjct: 83 NRFGVRVENLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFETSQDAEDAQ 141
Query: 567 KQYNGVPLDGRAMNI 611
K L G + I
Sbjct: 142 KTLQSTNLKGSEIQI 156
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.4 bits (105), Expect = 4e-06
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 575
+ +S L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER+ D A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 576 NGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGT--IRNNPKR 710
G+ L+GR + + + T++ ++GG +GG + P+R
Sbjct: 162 AGLMLNGRRIVVDVERG--RTVKGWLPRKLGG-GLGGRHYTKERPRR 205
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 7e-06
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 575
+ V L + V D + + F E+G + A V D +SGRS G V FE +A KA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP-EAAKAAVAA 323
Query: 576 NGVP-LDGRAMNIQLATSEINTLRPEARNRIG 668
NG +DGR +N+ L+ +P A+ R G
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +3
Query: 153 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 308
R GGG+ R G GG GF G RGR RGG +S N +RG V
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 42.3 bits (95), Expect = 7e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 369 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFE 539
+ T T P L V NLD + + ++ELFS+FG +KS ++ Y + S G V F
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 540 RKADAVKAMKQYNGV 584
+AV+A+ NGV
Sbjct: 471 HPFEAVQAINTLNGV 485
Score = 32.3 bits (70), Expect = 0.070
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Frame = +3
Query: 348 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT-- 521
E+ ++N + + V NL SD+ ELF FG + + +S +
Sbjct: 5 EKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKS 64
Query: 522 ----ADVVFERKADAVKAMKQYNGVPLDGRAMNIQ 614
A + FE K A A+ NG G + ++
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 396 KLLVSNLDFGVSDSD-IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 572
+L++ NL + + ++ FS+FG ++ + GR G A V + + A +AM
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 573 YNGVPLDGRAMNIQLATSE 629
NG +DGR + + A S+
Sbjct: 168 LNGTEIDGRPIAVDWAVSK 186
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEF-GILKS---ASVHYDRSGR--SLGTADVVFERKADAVK 560
+ V NL+F + +++F G L + A R G+ S+G V F+ KA AV
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 561 AMKQYNGVPLDGRAMNIQLA 620
AM NG LDG + I+L+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLS 700
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGIL 473
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 575
+ + NLDF +++ DI +FSEFG ++ D+ +G+S G A + +E + V A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 576 NGVPLDGRAMNI-QLATSEINTLRPEARNRIGGASVGGTI 692
V L R + + +A+ ++ E N + G ++
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGESGSSL 132
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/87 (22%), Positives = 41/87 (47%)
Frame = +3
Query: 351 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADV 530
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ + G V
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Query: 531 VFERKADAVKAMKQYNGVPLDGRAMNI 611
+ A KA+ + N G+ + +
Sbjct: 307 NYANHECAQKAVDELNDKEYKGKKLYV 333
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 441 IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 620
++ LF +G K V ++ R G A VVF+ +A +A+K G PL G+ M IQ +
Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103
Query: 621 TSE 629
S+
Sbjct: 104 KSK 106
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 387 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 566
GPT +++ NL G S D+ FG + + V+ D G+ A V F A A + +
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGKV--RASVRFSTLASAQQVV 154
Query: 567 KQYNGVPLDG 596
++ +GV DG
Sbjct: 155 QKLDGVTADG 164
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 575
L V L+ D D++ +FS FG + S V D+ +G SL A + F+ K KA +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 576 NGVPLDGRAMNIQLATS 626
V +D +++ + S
Sbjct: 306 QNVLIDDSRIHVDFSQS 322
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 578
L + NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 579 G 581
G
Sbjct: 72 G 72
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.017
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 569
L V NLDF +D+D+KE F + G I + + ++ +G+ G V F +KAM+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 34.3 bits (75), Expect = 0.017
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 578
L +SN+D VS++DIK LF + + SA V G S A + ++D A +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFI-SARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQ 133
Query: 579 GVPLDGRAMNIQLATSEINT 638
G R++ + S+ NT
Sbjct: 134 GAFCLKRSILVHSVKSDKNT 153
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 575
L VS + + + +++++FS+FG + + + + S G + F +A A+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 576 NGVPLDGRAMNIQLA 620
N GR +N+Q A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 575
L V+NL + ++++LF FG ++ + D+ +GR+ G A V + + A+KA +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 576 NG 581
+G
Sbjct: 264 DG 265
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +3
Query: 390 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKA------ 548
PT++ VSN+ V+ ++ F FG + + + +G SLG + F++++
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAA 152
Query: 549 -DAVKAMKQYNGVPLDGRAMNIQL 617
A A++Q NG+ G+ +++ L
Sbjct: 153 HSAKIAVQQANGLRFSGKPLSVVL 176
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.38
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 102 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 266
D++ ++ D +I ++ K + G K N GRGG GFR R G G G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159
Query: 267 GG 272
GG
Sbjct: 160 GG 161
Score = 28.7 bits (61), Expect = 0.87
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 162 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 272
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 272
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 165 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 272
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 153 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 251
R G GR R GRGG +G R GG +
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 575
++V+ + ++ +++LF++FG +K+ ++ D R+G G A + + A KA+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 576 NGVPLD 593
N LD
Sbjct: 72 NLSLLD 77
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +3
Query: 384 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 563
T T L +SNL ++SDI LF I+ S V D +S G + + A
Sbjct: 381 TESTNLYISNLPLHWNESDISTLFKPSKII-SNRVLRDSKEQSRGVGFARMQDRKTAEDI 439
Query: 564 MKQYNGVPLDGRAMNIQL 617
+ ++N LD +Q+
Sbjct: 440 INKFNNFVLDPALPPLQI 457
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 0.87
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKE----LFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 566
L V+NL+ ++ +D++ LFS +G + + ++ + G A VVF + A AM
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 567 KQYNGVPLDGRAMNIQLATSE 629
K G+ M IQ A S+
Sbjct: 64 KALKNFIFFGKEMKIQYAHSK 84
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 254
N+ GGG GR+ + + G G G+R+NR G R
Sbjct: 78 NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 171 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 272
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 411 NLDFGVSDSDIKELFSEFGILKSASVHY 494
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 399 LLVSNLDFGVSDSDIKELFSEFGILK 476
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 447 ELFSEFGILKSASVHYDRSGRSLGT---ADVVFERKADAVKAMKQYNGVPLDGRAMNIQL 617
E F ++G + +++ + S + ++RK DA +A+ +G DGR +
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
Query: 618 ATSEINT 638
T++ T
Sbjct: 200 GTTKYCT 206
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.6
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +3
Query: 105 QIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKS 284
Q + L D +K +GG + + RG G R G + RNR G
Sbjct: 48 QSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIID 107
Query: 285 TNYSRGDVNSTWKHDMFNDFGERKLQRNS 371
+ + + + + M F R+ QR S
Sbjct: 108 RRFGENNPHLSVEEKMLERF-SREQQRRS 135
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 6.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 165 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 341
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 342 FGERKLQRNSGTIT 383
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 174 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 311
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 706 LGLFRIVPPTLAPPIRFLASGLKVLISDVANCIFIARPSSGTP 578
+G+ + PP+ APP+ ++GL + A + PSS P
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 102 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 239
D+ + A DD+ K N+ G + A TG + R+N S
Sbjct: 603 DETDAAKDDLFKVNESIETNGHENFQKQALTSTGEQSSSNSRANPS 648
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,997
Number of Sequences: 5004
Number of extensions: 63736
Number of successful extensions: 220
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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