Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19p04
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 676 TFSHGGVDGRNCRGDNDICNRNS 744
           T+SHG  +G+      ++ NRN+
Sbjct: 25  TYSHGWTNGKRSTSLEELANRNA 47


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 238 VDRKSNLISWLKKNLLPVTEVNDNIVFGNLHFNYNQ*NGRIHKEKSAIFSGNLC--LINI 411
           +DR   ++ W +KN+L V  +   +V   L F     N          F G L   L+ +
Sbjct: 50  LDRLQRVVDWFRKNMLLVFTIAAVLVGLILGFLGRLANPTPQSITLISFPGELLMRLLKM 109

Query: 412 YVYWSNISVAFASDSKVIKRRSGRKNY 492
           ++    +S   +  +++  + SGR  Y
Sbjct: 110 FILPLIVSSLISGMAQLDPKGSGRMGY 136


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 231 VFNVTSRCLNRWYQICMCF 175
           V N+T+  +N W  +CMCF
Sbjct: 357 VSNLTA--MNVWDGVCMCF 373


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 231 VFNVTSRCLNRWYQICMCF 175
           V N+T+  +N W  +CMCF
Sbjct: 326 VSNLTA--MNVWDGVCMCF 342


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 231 VFNVTSRCLNRWYQICMCF 175
           V N+T+  +N W  +CMCF
Sbjct: 377 VSNLTA--MNVWDGVCMCF 393


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 231 VFNVTSRCLNRWYQICMCF 175
           V N+T+  +N W  +CMCF
Sbjct: 326 VSNLTA--MNVWDGVCMCF 342


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 PIQTPASYVEDISVDRKSNLISWLKKN 279
           P +TP  + + +S    S+  +WL+ N
Sbjct: 415 PARTPFQWDDSVSAGFSSSSNTWLRVN 441


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 162 YCMAGYNHCVVCAVICY 112
           Y   G +HCVVC    Y
Sbjct: 186 YSETGPSHCVVCQNFFY 202


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 PIQTPASYVEDISVDRKSNLISWLKKN 279
           P +TP  + + +S    S+  +WL+ N
Sbjct: 415 PARTPFQWDDSVSAGFSSSSNTWLRVN 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,886
Number of Sequences: 438
Number of extensions: 5399
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)