Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19o08
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           51   6e-09
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.59 
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)               30   2.4  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 29   3.1  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           29   4.2  
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                29   4.2  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   7.3  
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)           28   9.6  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   9.6  
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)                    28   9.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +1

Query: 343 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 522
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 523 E 525
           +
Sbjct: 128 K 128



 Score = 41.1 bits (92), Expect(2) = 6e-09
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 625 GGIELVAARGRIKISNTLESRLELIAQQ 708
           GGIEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261



 Score = 37.1 bits (82), Expect(2) = 6e-09
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 526 SLLGKAQQDYKNKIKKDVVLKVDTENFLSPD 618
           ++ G A ++YK + KK++ L VD +NFL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 328 RLKVLKVREDHVRNVLDEARKRLAEV 405
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 550 DYKNKI-KKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLES 684
           DY N+I   D+V++ D  N L PD+ G IEL   R  +  SN ++S
Sbjct: 47  DYGNRIIGLDLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQS 90


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -3

Query: 382 LHQVHYVRDLHALSVPSDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGPFRC* 203
           +HQVH VR +H   + +  L +  +    S+   P++PS  S P +    +    P    
Sbjct: 618 VHQVHLVRLVHLAHLCTCTLSTPSTPSTPSTRSTPSTPSTPSTPSTPSTPSTPSTPSLTH 677

Query: 202 TPPRPS 185
           TP  PS
Sbjct: 678 TPSTPS 683


>SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)
          Length = 246

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 506 PTRLWWSPCSEKLNKTTRIRSR 571
           P R WWS  SEKL K  R++ R
Sbjct: 214 PYRSWWSLASEKLRKERRMKPR 235


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 500 VKPTRLWWSPCSE--KLNKTTRIRSRRTLC*--KSTLRTFCRPTPVVVSSWLQP 649
           V P ++  +PC +  K+   T  R   TLC   KS   T CRP+ V V+  + P
Sbjct: 327 VDPVKVAVTPCVDPVKVPSDTLCRPSDTLCRPSKSVSDTLCRPSEVAVTPCVDP 380


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 355 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 531
           D V   L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223

Query: 532 LGKAQQDYK 558
             K Q D K
Sbjct: 224 AKKVQGDVK 232


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -3

Query: 373 VHYVRDLHALSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 215
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +DGP
Sbjct: 19  LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 331  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 441
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 575 TLC*KSTLRTFCRPTPVVVSSWLQ 646
           +LC  S L  FC PTPV+VS++++
Sbjct: 658 SLCAMSGLILFCLPTPVLVSNFIK 681


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +1

Query: 322  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 432
            QA L+  +  +D+++   D  +KRLA++  + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495


>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
          Length = 1595

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 547  QDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLESRLE 693
            +D K  I   +V+       L P T  G+EL AA   +K+S  L   LE
Sbjct: 974  EDRKGNINCTLVMGKARVTPLEPVTIPGLELAAAVVSVKVSEMLRRELE 1022


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 7/36 (19%), Positives = 24/36 (66%)
 Frame = -1

Query: 414 VLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVR 307
           V++  ++ +   ++++T+ +  H Q+L ++++ H+R
Sbjct: 23  VIYTITRTVIGHLQHLTFTVIGHLQHLTSTVIGHLR 58



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 417 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVR 307
           G L H +  +   ++++T  +  H Q+L ++++ H+R
Sbjct: 55  GHLRHLTSTVIGHLQHLTSTVIGHLQHLTSTVIGHLR 91


>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
          Length = 486

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 523 ESLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLESRL 690
           E +LGK  + Y N  KK  V +V  ++F++   C   +L+  RG I +    E R+
Sbjct: 405 EVILGKLHETYSNVCKKRQVNQVTQDDFIA--LC---KLLETRGIITLKKAKEMRM 455


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 373  LDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQ 549
            L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L  K Q 
Sbjct: 5016 LEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQG 5075

Query: 550  DYK 558
            D K
Sbjct: 5076 DVK 5078


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,498,544
Number of Sequences: 59808
Number of extensions: 422035
Number of successful extensions: 1285
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)