Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19o08
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   202   2e-52
U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    28   6.4  
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    28   6.4  
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  202 bits (494), Expect = 2e-52
 Identities = 106/224 (47%), Positives = 136/224 (60%)
 Frame = +1

Query: 97  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 276
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 277 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 456
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 457 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGIE 636
            L QL+E  V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+E
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVE 182

Query: 637 LVAARGRIKISNTLESRLELIAQQLLPEIRNALFGRNPNRKFTD 768
           L A  G+IK+S+TLESRLELIA Q++P++R ALFG NPNR F D
Sbjct: 183 LSARAGKIKVSSTLESRLELIANQIVPQVRTALFGPNPNRSFFD 226


>U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical
           protein C46G7.5 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 503 KPTRLWWSPCSEKLNKTTRIRSRRTLC*KSTLRTFCRPT 619
           +P  LW S  S +L +   IRSRRT C     RTF  P+
Sbjct: 85  RPQTLWMST-SPRLRELMSIRSRRTNC-SELCRTFRLPS 121


>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 771 LIGEFTVRVASEEGVTYLRQQLLGDQLQARLQSVADLDTSPGCNQLDTTTGVGRQKVLSV 592
           L+  F   VA +  +      L  ++++  ++   DL    GC+   T  GVG +K + +
Sbjct: 190 LLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVEL 249

Query: 591 DFQH 580
             QH
Sbjct: 250 IRQH 253


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 771 LIGEFTVRVASEEGVTYLRQQLLGDQLQARLQSVADLDTSPGCNQLDTTTGVGRQKVLSV 592
           L+  F   VA +  +      L  ++++  ++   DL    GC+   T  GVG +K + +
Sbjct: 190 LLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVEL 249

Query: 591 DFQH 580
             QH
Sbjct: 250 IRQH 253


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 382 LHQVHYVRDLHALSVPSDELG 320
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,133
Number of Sequences: 27780
Number of extensions: 305175
Number of successful extensions: 947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)