Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19o02
         (193 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    18   9.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 48  LVLIQVNIFTILNNVI 1
           +VL  VN+  +L NV+
Sbjct: 70  IVLAIVNVMVVLGNVL 85


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
          protein.
          Length = 405

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = +1

Query: 61 YYFTNWT 81
          YY  NWT
Sbjct: 30 YYLPNWT 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822
Number of Sequences: 438
Number of extensions: 140
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)