Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19o01
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    29   0.52 
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    28   1.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.8  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   4.8  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    26   4.8  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   6.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   8.5  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.5  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 124 VQFFIFSVCVHIVTLFTYIIYYSDIFASIYLKTVETEYDYIIVGSG 261
           V+F I+  C+H++TL     + +DI  +   K V  E  Y  +G G
Sbjct: 63  VKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDEIYYEWLGKG 108


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 202 ASIYLKTVETEYDYIIVGSGTAGSIIAHRI 291
           AS+  +   T +  ++VG G+AG  +AH+I
Sbjct: 18  ASMLARFASTHHKVLVVGGGSAGISVAHQI 47


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 349 NHDPCFLLPILYMCS*SLWLCDVLLWSQL 263
           +H P FLL ++Y+    L+  D  LW  L
Sbjct: 645 SHQPKFLLSLVYLTDLVLFFLDTYLWYML 673


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 223 VETEYDYIIVGSGTAGSI---IAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSV 393
           +   +  ++VG  T  SI   + + IA E   TY+   A  +     ++P+L P L   +
Sbjct: 320 LRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRS--NVPLLPPTLVDQI 377

Query: 394 YDWNYE 411
           Y W  E
Sbjct: 378 YLWELE 383


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 592 EFVEKHFLHLDDLQYESKLVDSVLSAATEFGYKILESEFDL 714
           E ++  FL+LD+L YE K  D+       FG    E + DL
Sbjct: 426 EALDHDFLYLDNLAYEKKDDDTAFD--NSFGETSFEKDEDL 464


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 571 DYIKKQFEFVEKHFLHLDDLQYESKLVDSVLSAATE--FGYKILESEFDLGFTKSLL 735
           D++KK F      F HL+ +  E  +  + L   T+  +G + +E+ FDL   K +L
Sbjct: 487 DHVKKVFNDELSKFQHLEPMAAEFNITRNYLDWITQLPWGKRSVEN-FDLDHAKEVL 542


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 442 MVDHKCRLPQGKIVGGSSKLNNMV 513
           ++D +CRLP G       KLNN +
Sbjct: 510 LLDEECRLPSGNHQSFLQKLNNQL 533


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 526 NISHYADWFHRKYSNDYIKKQFEFVEKHFLHLDDLQYESKLVDSVLSAATEFGYKILE 699
           N++ +  W      ND+++   +F+     HL  L YE  L   + +    F  K+ E
Sbjct: 421 NLAEWEQWVFVFAENDHLEDIADFLPTGENHLSPLVYEMILAQYLATDERTFNKKLHE 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,915
Number of Sequences: 5004
Number of extensions: 67826
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)