Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19n14
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   5.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 518 PTYNQPERYHPPRTT 474
           P Y QPER++  R T
Sbjct: 238 PLYQQPERHYERRAT 252


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 95  LLRPEAKYDDKPVEAFRDYNIDEND 169
           + R E   D +  + FRD NID  D
Sbjct: 32  ICRIETSIDQQKEDDFRDGNIDVED 56


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 518 GKSIVYGDDSFQRNPDTYNPKYNTEHGMYKPKCGL 622
           G ++V+  D   RNP   N  Y   + +    C L
Sbjct: 336 GNTLVFLFDLIGRNPTVQNKLYEETYALAPAGCDL 370


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 289 LNSGFEVIELQPLFHFTFDKVNSHIRVH 206
           +N GF   +   +F   FD+    +R+H
Sbjct: 281 INQGFRTTKSSKMFGSRFDEERLTLRIH 308


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 552 WKLSSPYTIDLPHLQPTGKVSPTTHHCGSS*NAIT 448
           W  +S  T+D     P G VS T   C     ++T
Sbjct: 474 WGSASDVTLDEAVKSPLGSVSSTESTCSGEVASLT 508


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 647 HDEYLYRVLVHNKSKFP 697
           H  Y Y++ VH++   P
Sbjct: 515 HQPYQYKIAVHSEQNVP 531


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 540  TTASNVTRTRTILNTIL 590
            ++ASNVT   T L TIL
Sbjct: 951  SSASNVTNVTTNLTTIL 967


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 221 SYSCACRNMFSELS 180
           +YSC  RN+ +E+S
Sbjct: 682 NYSCVARNLAAEVS 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,889
Number of Sequences: 438
Number of extensions: 6576
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)