Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19n09
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.61 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   1.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   5.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.9  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   YGKSKSEIAFFMSLLAATDISMRFCTPF--VAGKIG--WENNTFFLVGVMTMAMGRVVLA 170
           Y K  +E   F  +       M  CT F  + GK    +      L       +G  +  
Sbjct: 113 YTKIGAEFGKFSQVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCG 172

Query: 171 YSQASWVLTSVAVIIGFGKGLRTVFMALVIPTYVPLDKLPGATGLQLITAGVVYLALGPV 350
            S++ W L +   I G G G     +++++   VPL +     G+  +   +     GPV
Sbjct: 173 TSRSLWQLVAARAIAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPV 232

Query: 351 VGWIKD 368
            G+  D
Sbjct: 233 GGYFAD 238


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 256 TKAINTVRRPLPKPIITATEVKTQLA*LYAKTTLPIAIVITPT 128
           T  + T+  P+ + + T TEV  +      +TT P+  +ITPT
Sbjct: 216 TPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEAMITPT 258



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 21/89 (23%), Positives = 33/89 (37%)
 Frame = -2

Query: 388 VTAVEALSLIQPTTGPNAR*TTPAVINCSPVAPGNLSSGTYVGITKAINTVRRPLPKPII 209
           V A+  L +   TT      TTP     +      + +     +T     V R +   I 
Sbjct: 187 VEAMTILPMAAMTTPMEETTTTPMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIR 246

Query: 208 TATEVKTQLA*LYAKTTLPIAIVITPTRK 122
           T T ++  +      TTLP A + TP  +
Sbjct: 247 TTTPMEAMITPTVETTTLPTAAMTTPVEE 275


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 23  NSFFYVVTG--GNRYFHEILHTICCWQNRVGEQHLLPCWRYDDGNGES 160
           N+FF V+    G ++F   L+  C W    G+Q+ LP  ++  G+ E+
Sbjct: 336 NAFFGVMIAILGVQFFKASLNRQCVWLGDYGDQY-LPTGQFCGGHWEN 382


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  LAATDISMRFCTPFVAGKIGWENNTFFL 128
           L A D+ + F +P +  + GW +N F L
Sbjct: 119 LLAIDVLVVFLSPILRHREGWRSNAFVL 146


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 154 PIAIVITPTRKKVLFSHPILPATNGVQNLMEISVAASNDIKKAISLLDLP 5
           P  +  TP+    L S P   +T  + ++   + + SNDI   +   D P
Sbjct: 106 PTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHP 155


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 301 PVAPGNLSSGTYVGITKAINTVRR 230
           P+  G LSS   + +TK I+TV+R
Sbjct: 828 PLISGKLSSCESINLTKDISTVKR 851


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 333 LALGPVVGWIKDNASTAVTLHCLNIFTY 416
           L  G    +  D  STA+ LHCL   TY
Sbjct: 638 LTPGSYNAFFADMWSTAIVLHCLYFRTY 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,825
Number of Sequences: 5004
Number of extensions: 48639
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)