Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19n09
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.055
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.055
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.39 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 298  VAPGNLSSGTYVGITKAINTVRRPLPKPIITATEVKTQLA*LYAKTTLPIAIVITPTR 125
            VA  N +  T+V +TK     +R +   +    +VK  L  + A   L +A+VI   R
Sbjct: 1577 VAGSNQAEFTFVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATVALVVAVVIVALR 1634


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 298  VAPGNLSSGTYVGITKAINTVRRPLPKPIITATEVKTQLA*LYAKTTLPIAIVITPTR 125
            VA  N +  T+V +TK     +R +   +    +VK  L  + A   L +A+VI   R
Sbjct: 1573 VAGSNQAEFTFVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATVALVVAVVIVALR 1630


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 203 SSNNWFR*RPTYCIYGLGNSNICTTGQIAWRYWTTID 313
           S  NW    P        NS + T  ++ WRYW  +D
Sbjct: 544 SHGNWIY--PASMTIPGSNSAVFTNYKLYWRYWQGVD 578


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 115 LFSHPILPATNGVQNLMEISVAASNDIKKAISL 17
           L S+ ILP  NG+   + ++   +N I   + L
Sbjct: 46  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDL 78


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 115 LFSHPILPATNGVQNLMEISVAASNDIKKAISL 17
           L S+ ILP  NG+   + ++   +N I   + L
Sbjct: 84  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDL 116


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 350 CRLDQRQRLNCRY 388
           C +D+RQR  C+Y
Sbjct: 152 CIIDKRQRNRCQY 164


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 350 CRLDQRQRLNCRY 388
           C +D+RQR  C+Y
Sbjct: 152 CIIDKRQRNRCQY 164


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 550 FXNLHSYLLKR*KYSKFNQAFISCSVDF 467
           F ++  Y  K  KYS    A I+C ++F
Sbjct: 93  FSSVTLYRNKTVKYSARMHAIIACQMEF 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,669
Number of Sequences: 438
Number of extensions: 3637
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)