Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19n08
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    29   0.058
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     29   0.058
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 452 GERPVKDVINLIGMPEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLY 616
           G   + DVI +I    KY   E   P+ MNT  + PY++   I   A K  R  Y
Sbjct: 10  GNIHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE--IIEQPASKALRFRY 62


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 452 GERPVKDVINLIGMPEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLY 616
           G   + DVI +I    KY   E   P+ MNT  + PY++   I   A K  R  Y
Sbjct: 10  GNIHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE--IIEQPASKALRFRY 62


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 451 WRTPCERCYKSYRN 492
           WR  C +C+KS  N
Sbjct: 371 WRLTCRKCFKSRTN 384


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 675 WTWLKSLLCAFLTSLW 628
           WTW K+  C+ +TS +
Sbjct: 108 WTWAKNENCSGITSAY 123



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 305 KAYYVLSKVHTTICANLYWTLIATRPVSKLFLLLY*FQANSSL 177
           K+ Y  + VH     N+ WT  + + +S   +L +    ++SL
Sbjct: 283 KSQYQANNVHYQGKENILWTQASAKGISDNGVLFFGLVGDTSL 325


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 227  LDELRLKSNTDLHKLWYVLLKERNMLYTMEH 319
            LDEL+L  +   H+L  +L      LY   H
Sbjct: 1448 LDELQLSRHATSHELKGLLCGNTYQLYLTSH 1478


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 227  LDELRLKSNTDLHKLWYVLLKERNMLYTMEH 319
            LDEL+L  +   H+L  +L      LY   H
Sbjct: 1444 LDELQLSRHATSHELKGLLCGNTYQLYLTSH 1474


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 234 SSSFQALPTLILVSGQFFFAS 172
           S S  A+P  +  S  FFFA+
Sbjct: 134 SDSTMAIPYAVTKSAMFFFAA 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,379
Number of Sequences: 438
Number of extensions: 4889
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)