Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19n04
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    42   6e-05
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    28   1.4  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    26   5.6  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 479 VXVLPLHXQVGGHTRLLVLNDSTVIKPLNIRELHFYQNIP---EDIQGFVPRYKGVMQAS 649
           V + P   QVGGHT     +   V KPL   E  FY+ I     ++  F+P+Y GV+  +
Sbjct: 311 VRLEPFKHQVGGHTAFFRFSKRAVCKPLTRNENTFYETIEACHPELLPFIPKYIGVLNVT 370

Query: 650 NTGT 661
           +T T
Sbjct: 371 HTIT 374


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 251 RIRRFYRERVPIWDFTTSGLKKIYSQVDSGGGGSAEVMVYSLGWG 385
           R R  +     +W    S  ++ +  VDSG     E ++Y  GWG
Sbjct: 180 RARWIWNAEDHVWTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWG 224


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 272 ERVPIWDFTTSGLKKIYS 325
           E + +WD TT  +K IYS
Sbjct: 286 EEIRVWDTTTGNVKDIYS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,250
Number of Sequences: 5004
Number of extensions: 46145
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)