Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19n04
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 249 SQAQPLQLTQNITQRTGTEL---GRRQSSVTHLKIISTVFGLXETARTI 112
           S+ QP+QL + + Q +GT +    R + S  +L I++   G  E+  T+
Sbjct: 254 SRRQPVQLNERVRQVSGTLIIREARVEDSGKYLCIVNNSVG-GESVETV 301



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 320  YSQVDSGGGGSAEVMVYS 373
            YS+V S GGGS    V+S
Sbjct: 1787 YSRVPSQGGGSGTHNVFS 1804


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 663 LVPVLEACITPLYLGTKPWISSGMFW*KCNSRMFSGLITVLSFSTRSL 520
           L+ V   C+  + L    W+S  +     + R+  G+ TVL+ ST SL
Sbjct: 248 LIQVYVPCVLIVVLS---WVSFWIHREATSDRVGLGITTVLTLSTISL 292


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  PSASFIFVLIFFVHH 86
           P A F+F+  FF+H+
Sbjct: 471 PVAYFMFLTFFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  PSASFIFVLIFFVHH 86
           P A F+F+  FF+H+
Sbjct: 457 PVAYFMFLTFFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  PSASFIFVLIFFVHH 86
           P A F+F+  FF+H+
Sbjct: 491 PVAYFMFLTFFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  PSASFIFVLIFFVHH 86
           P A F+F+  FF+H+
Sbjct: 440 PVAYFMFLTFFFIHY 454


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 18  AKGSKCPAPSASFIFVL 68
           AKG K   P A FIF L
Sbjct: 270 AKGGKLACPPAIFIFDL 286


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 248 DRIRRFYRERVPIWDFTTSGLKKIYSQVDSGG 343
           + I RF++ + P+     S  + I S  D GG
Sbjct: 549 ENIERFFKSKPPVATMYGSDEEIINSSNDEGG 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,466
Number of Sequences: 438
Number of extensions: 3760
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)