Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m24
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    36   0.006
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      32   0.091
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    31   0.16 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    28   1.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   2.0  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   2.6  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   2.6  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.6  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.4  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   3.4  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   3.4  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 137 YLSAIGLK-PFKMNKTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLN 289
           +L  + L+ P +    C +C ++V  T ++    K WH  CFKC  C+  L+
Sbjct: 8   HLDRLSLETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLD 59


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
 Frame = +2

Query: 176 KTCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLN-----MRTYKGYGKLPYCEAHV 340
           K+C  C  ++     +    K  H  CFKC  CS  L       R  K Y  L Y E   
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFS 315

Query: 341 PKAK 352
           P+ K
Sbjct: 316 PRCK 319


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 NKTCARCEKTVYPTEELKCLDKVWHKGCFKCQECS 277
           +K CA C + +   + ++ L  ++H  CF+C +C+
Sbjct: 113 SKICASCGQVI-SGQYVRALGNIYHLECFRCHDCN 146


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 167 KMNKTCARCEKTVYPTEE-LKCLDKVWHKGCFKCQECSMTL 286
           K +  C RC +     E  +     +WHK CF C +C   L
Sbjct: 14  KGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGL 54



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/50 (22%), Positives = 21/50 (42%)
 Frame = +2

Query: 179 TCARCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYKGYGKLPYC 328
           TC  C   +     +   D  +H+ CF+C +C   +    +K   +  +C
Sbjct: 77  TCTACRMRIKDYALMSGYDS-YHRECFRCHDCRKQIIDSNFKRDNRTIFC 125


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 188 RCEKTVYPTEELKCLDKVWHKGCFKCQECSMTLNMRTYKGYGKLPYCEAHVPKAKPTTMA 367
           RC K + P+EEL+ L +V +       E   TL + +       P     + +   TT  
Sbjct: 36  RCTKDIIPSEELRYLRQVLNDSIPSKDEPLPTLKLDSLNDISGEPVIPKIIHQTWKTT-- 93

Query: 368 ETPELKRIAENTKLQSNVKYHADFE 442
           E PE  + A+    QS +  H D+E
Sbjct: 94  EVPEGWKGAQ----QSCIDLHPDYE 114


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 490 KDQSEHEDHK*RGVPRRSREESPDGEAEADQRKRRNS 600
           K++ E +D K +   R+S EES DGE+   ++K + S
Sbjct: 471 KEKKEKKDKKHKKSKRKS-EESEDGESPKKKKKSKKS 506


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
 Frame = +2

Query: 233 DKVWHKGCFKCQECSMTLNMRTYKGYGKLPYCEAHVPKAKPTTMAETPEL--KRIAENTK 406
           D++   G F+C    +   MRT K   K      H+ K     +   P      IAE+  
Sbjct: 408 DRIEVTGIFRCVPVRLNPRMRTVKSLFKTYVDVVHIKKQDKRRLGTDPSTLESDIAEDAA 467

Query: 407 LQ-SNVKYHADFERSKGKFTQVADD 478
           LQ   V+  +D E  K +     DD
Sbjct: 468 LQIDEVRKISDEEVEKIQQVSKRDD 492


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 314 KLPYCEAHVPKAKPTTMAETPELKRIAE 397
           K+P    H+    P++ A TP +KR+++
Sbjct: 71  KIPSAVPHISTPNPSSGASTPNIKRVSD 98


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 588 FSLICLCLSIWAFFSR-SPWYATLLMIFVFALIL 490
           FSL  L +S+  FF + +P+Y+ L  +  FAL+L
Sbjct: 16  FSLCTLVISVPFFFLQMTPFYSILCFLSFFALLL 49


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 522 LLMIFVFALILKVSGSSATCVNFPLLLSKSAWYFTLLCSFVFSAIRFNSGVSAIVVGFAF 343
           L+  F+F  ++ +    +T   F L +S    +  L C+F+ ++   +  V  I VG AF
Sbjct: 193 LICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFLRTS-DGSPNVVLIRVGGAF 251

Query: 342 G 340
           G
Sbjct: 252 G 252


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 374 PELKRIAENTKLQSNVKYHADFERSK 451
           PE++RIA +  L +NVK  A+ +R +
Sbjct: 376 PEIRRIARHRHLPTNVKKAAEIKREE 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,987
Number of Sequences: 5004
Number of extensions: 49981
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)