Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m22
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    40   2e-04
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   3.0  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   5.3  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    26   5.3  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    25   7.0  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.2  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.2  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 149  VTVQKARGLLIKGKNGTNNCFVTIALGKEKFQTSVKHKATQNVEWLEECELPIPTQGNTA 328
            V V KA  L     NG ++ FV   L  E+   +  HK T N  + E  E+ +P +  T 
Sbjct: 1041 VDVIKATDLPAADSNGKSDPFVVFELQGEEVYRTKTHKRTLNPTFNESFEVELPCK-QTC 1099

Query: 329  EVVLKVYDEDF-VKDHLLGQVSIPLKDLDVYERPRNRWYKLQGKSG 463
              V  V+D DF  KD  LG   I  K L   ++  N    L  K G
Sbjct: 1100 NFVANVFDWDFGNKDDHLGSCVIDCKLLQ-QQQQTNYEIPLDSKQG 1144


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 368 DHLLGQVSIPLKDLDVYERPRNRWYKLQGKSG 463
           D +LG V+IPL           +WY +QG  G
Sbjct: 757 DSILGVVNIPLATTLTTSSQLTKWYPIQGGIG 788


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 329 EVVLKVYDEDFVKDHLLGQVSIPLKDLDVYERPRNRWYKLQGKSGKENDKDR 484
           E + KVY   F  D     VSIP  D+ +   P N +YK   K G +  K R
Sbjct: 290 EQISKVYYPIFSTD-----VSIPALDISLSNTPNNSFYKFD-KLGSDLIKQR 335


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 574 QPGTKCWW 597
           QPG KCWW
Sbjct: 228 QPGNKCWW 235


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 401 KDLDVYERPRNRWYKLQGKSGKENDKDRGEIEVKIAFTVKEGSLTDLSKKDKHRSSLSSL 580
           K L + E+P +   K  GKS +E+ K         A  +KE  ++D  KK K +   + +
Sbjct: 180 KKLRLAEKPASNNSKA-GKSSQESKKSSKAPAESAAAVIKEDKVSD-RKKSKKKPKKTPV 237

Query: 581 AQNVGGSLMSIGSIEKRK 634
           + +         S +K K
Sbjct: 238 SNSTASQASENASDKKTK 255


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 467 ENDKDRGEIEVKIAFTVKEGSLTDLSKKDKHRSSLSSLAQNV 592
           +ND +R E+E +IAF  ++ +L +    D   SSL+++  N+
Sbjct: 47  KNDINRHEMERRIAFLNRKQALFNAFMHDS-SSSLNTMESNI 87


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 291 NANYQYLLKETPLKLYLKFMTKILLKII 374
           NAN++ LL  TPL+  LK +  +L  I+
Sbjct: 701 NANFRLLLTGTPLQNNLKELVSLLAFIL 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,712
Number of Sequences: 5004
Number of extensions: 53072
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)