Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m22
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 628 FFNTANAHEASTNILCQA 575
           +F T NAHE     LC A
Sbjct: 726 YFGTGNAHETQITTLCVA 743


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 628 FFNTANAHEASTNILCQA 575
           +F T NAHE     LC A
Sbjct: 816 YFGTGNAHETQITTLCVA 833


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 565 GSVLVFLAEIREAAFLHCEGYF 500
           G+VLV LA +RE A      YF
Sbjct: 203 GNVLVILAVVRERALQTVTNYF 224


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 434 RWYKLQGKSGKENDKDRGEIE 496
           R Y+  GK+ KE  +DR E E
Sbjct: 276 REYRKYGKTSKERSRDRMERE 296


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 189 KTVQITVLLPLPSVKKNSKLPLNIKPHRMWNG 284
           K   + +L+ LPS       P  +KP  +W G
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTG 49


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 476 KDRGEIEVKIAFTVKEGSLTDLSKKDKHRSS 568
           K+RGEIEVK    +K    T   +K +HRSS
Sbjct: 577 KERGEIEVKGKGIMK----TYWLEKREHRSS 603


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 227 GKEKFQTSVKHKATQNVEWLEECELPIPTQGNT 325
           GKE +QT  +  A    +W +       +  NT
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAGFSSSSNT 436


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 227 GKEKFQTSVKHKATQNVEWLEECELPIPTQGNT 325
           GKE +QT  +  A    +W +       +  NT
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAGFSSSSNT 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,925
Number of Sequences: 438
Number of extensions: 3860
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)