Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m19
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.77 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.8  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   9.5  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 645 PQIVQPIPHMLERNVPTMMST 707
           P  V  +PH L  N+PTM ST
Sbjct: 4   PYHVAQLPHHLSPNMPTMDST 24


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 420 SWTCPYCGYCDH--HGLKKC 367
           ++TCP CG C    H +K C
Sbjct: 72  AYTCPICGACGDIAHTVKYC 91


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 551 SIIFKAFIEQSYNKYCKK 498
           S+ FK+ I +++   CKK
Sbjct: 60  SVFFKSHITEAFQTQCKK 77


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 561 LWKTYAGLQYCAVAPPDKGVANI 629
           +W  Y G+ Y  + PP++ + ++
Sbjct: 192 VWWDYKGIVYFELLPPNRTINSV 214


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 551 SIIFKAFIEQSYNKYCKK 498
           S+ FK+ I +++   CKK
Sbjct: 60  SVFFKSHITEAFQTQCKK 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +3

Query: 279 IGHQMPINGLLNSSYNRIVHNTDMNDHNVH 368
           + ++  +N     S+  ++HN  +N  ++H
Sbjct: 558 VSNEQFLNTAATLSFCEMIHNAQVNKRSIH 587


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +3

Query: 558 LLWKTYAGLQYCAVAPPDKGVANI 629
           L+W  + G+ Y  + PP++ + ++
Sbjct: 70  LVWWDHKGIVYFELLPPNRTINSV 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,050
Number of Sequences: 438
Number of extensions: 5408
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)