Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m09
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    25   0.59 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.2  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 YSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIE 505
           +S + T+ +++   E+V G D+M Q+ Q G+  E
Sbjct: 51  HSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKE 84


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 122 EYICVNMNTLVRRSFQAFNTTLKISC 199
           EY C+ ++ L +R F  +   + I C
Sbjct: 227 EYSCLKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 122 EYICVNMNTLVRRSFQAFNTTLKISC 199
           EY C+ ++ L +R F  +   + I C
Sbjct: 227 EYSCLKVDLLFKREFSYYLIQIYIPC 252


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 379 FITQHIM-ALVRNCMHP 332
           F T +++ A  RNC+HP
Sbjct: 25  FFTMYLVRAFCRNCIHP 41


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 379 FITQHIM-ALVRNCMHP 332
           F T +++ A  RNC+HP
Sbjct: 473 FFTMYLVRAFCRNCIHP 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,215
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)