Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m06
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    28   1.5  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    27   2.6  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 113 CNRPGGNKA*NLKLTHHRKIL 175
           CNR  G+KA N  L HH K+L
Sbjct: 446 CNRLAGDKADNWWLRHHPKVL 466


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 464 GRGWRHRGNAGHVNVKRQRKGK 529
           GRG R RGN GH    R+ +G+
Sbjct: 96  GRGQRGRGNYGHTAPNRRGRGR 117


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 337 MKKLPGESGRDFSLRINSALKALHNPVENLDYPEDIDTEDTKGER 471
           +++LPGE   +FS R+N A+     PV     P  ID    K E+
Sbjct: 71  IQRLPGERLSEFSQRVNKAI-----PVSFKSGPSKIDEFTDKKEK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,204
Number of Sequences: 5004
Number of extensions: 41741
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)