Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m06
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364...    28   8.1  

>05_04_0106 -
           18034965-18034975,18035128-18035323,18036320-18036412,
           18037219-18037264,18037411-18037538,18037892-18037959,
           18038058-18038084,18038181-18038291,18038404-18038482
          Length = 252

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 60  NGS*NTCQKTSRSERSLSATGPAGTKLKI 146
           +GS   CQ T + E  L+ +GP G K+ +
Sbjct: 34  HGSSLRCQSTEQEEEELTISGPRGAKIVV 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,090
Number of Sequences: 37544
Number of extensions: 271628
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)