Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19m06
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ292466-1|CAC44372.1| 2269|Homo sapiens WDR9 protein, form B p... 31 3.0
AJ292465-1|CAC44371.1| 2320|Homo sapiens WDR9 protein, form A pr... 31 3.0
AJ238214-1|CAC37033.2| 2269|Homo sapiens hypothetical protein pr... 31 3.0
AJ222636-1|CAA10896.1| 220|Homo sapiens hypothetical protein pr... 31 3.0
AB080587-1|BAD74072.1| 2199|Homo sapiens WD repeat protein WDR9-... 31 3.0
AB080586-1|BAD74071.1| 2269|Homo sapiens WD repeat protein protein. 31 3.0
AY686224-1|AAT95434.1| 153|Homo sapiens voltage-gated sodium ch... 30 6.9
AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium ch... 30 6.9
AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium ch... 30 6.9
AF150882-1|AAF24980.1| 1444|Homo sapiens voltage-gated sodium ch... 30 6.9
AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium ch... 30 6.9
>AJ292466-1|CAC44372.1| 2269|Homo sapiens WDR9 protein, form B
protein.
Length = 2269
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 GRKIPAKKHRGV-KDPLVQQARREQSLKSKINAPPKDPDDQPVPRS 198
GRK+P + V + L+ + EQSLKS+I ++QP+P S
Sbjct: 1658 GRKLPHRNASAVARKKLLHNSEDEQSLKSEIEEEELKDENQPLPVS 1703
>AJ292465-1|CAC44371.1| 2320|Homo sapiens WDR9 protein, form A
protein.
Length = 2320
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 GRKIPAKKHRGV-KDPLVQQARREQSLKSKINAPPKDPDDQPVPRS 198
GRK+P + V + L+ + EQSLKS+I ++QP+P S
Sbjct: 1658 GRKLPHRNASAVARKKLLHNSEDEQSLKSEIEEEELKDENQPLPVS 1703
>AJ238214-1|CAC37033.2| 2269|Homo sapiens hypothetical protein
protein.
Length = 2269
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 GRKIPAKKHRGV-KDPLVQQARREQSLKSKINAPPKDPDDQPVPRS 198
GRK+P + V + L+ + EQSLKS+I ++QP+P S
Sbjct: 1658 GRKLPHRNASAVARKKLLHNSEDEQSLKSEIEEEELKDENQPLPVS 1703
>AJ222636-1|CAA10896.1| 220|Homo sapiens hypothetical protein
protein.
Length = 220
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 GRKIPAKKHRGV-KDPLVQQARREQSLKSKINAPPKDPDDQPVPRS 198
GRK+P + V + L+ + EQSLKS+I ++QP+P S
Sbjct: 99 GRKLPHRNASAVARKKLLHNSEDEQSLKSEIEEEELKDENQPLPVS 144
>AB080587-1|BAD74072.1| 2199|Homo sapiens WD repeat protein WDR9-form2
protein.
Length = 2199
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 GRKIPAKKHRGV-KDPLVQQARREQSLKSKINAPPKDPDDQPVPRS 198
GRK+P + V + L+ + EQSLKS+I ++QP+P S
Sbjct: 1658 GRKLPHRNASAVARKKLLHNSEDEQSLKSEIEEEELKDENQPLPVS 1703
>AB080586-1|BAD74071.1| 2269|Homo sapiens WD repeat protein protein.
Length = 2269
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 GRKIPAKKHRGV-KDPLVQQARREQSLKSKINAPPKDPDDQPVPRS 198
GRK+P + V + L+ + EQSLKS+I ++QP+P S
Sbjct: 1658 GRKLPHRNASAVARKKLLHNSEDEQSLKSEIEEEELKDENQPLPVS 1703
>AY686224-1|AAT95434.1| 153|Homo sapiens voltage-gated sodium
channel Nav1.9 protein.
Length = 153
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 393 CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 253
C+VD + + P + W L TCY + + F S +F IL+ S IF
Sbjct: 69 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 114
>AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium channel
protein.
Length = 1791
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 393 CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 253
C+VD + + P + W L TCY + + F S +F IL+ S IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075
>AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium channel
type XI alpha subunit protein.
Length = 1791
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 393 CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 253
C+VD + + P + W L TCY + + F S +F IL+ S IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075
>AF150882-1|AAF24980.1| 1444|Homo sapiens voltage-gated sodium channel
alpha subunit, alternate splice variant SCN12A-s protein.
Length = 1444
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 393 CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 253
C+VD + + P + W L TCY + + F S +F IL+ S IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075
>AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium channel
alpha subunit SCN12A protein.
Length = 1791
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 393 CTVDPQ*EVPSTLSW*LLHTCYGVASN*TFVSTPVFCILIESLDFIF 253
C+VD + + P + W L TCY + + F S +F IL+ S IF
Sbjct: 1030 CSVDKR-KPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIF 1075
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,628,499
Number of Sequences: 237096
Number of extensions: 1468422
Number of successful extensions: 3867
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3866
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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