Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m06
         (695 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051866-1|AAK93290.1|  332|Drosophila melanogaster LD36157p pro...    46   4e-05
AE014298-2587|AAF48743.1|  332|Drosophila melanogaster CG8326-PA...    46   4e-05

>AY051866-1|AAK93290.1|  332|Drosophila melanogaster LD36157p
           protein.
          Length = 332

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +1

Query: 67  RKIPAKKHRGVKDPLVQQARREQSLKSKINAPPKDPDDQPV 189
           RKIP +KH GV+DPL Q  ++E+ L    N PP   D+Q V
Sbjct: 5   RKIPVRKHHGVRDPLKQLEQKEKKLSKVTNNPPVKKDEQQV 45


>AE014298-2587|AAF48743.1|  332|Drosophila melanogaster CG8326-PA
           protein.
          Length = 332

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +1

Query: 67  RKIPAKKHRGVKDPLVQQARREQSLKSKINAPPKDPDDQPV 189
           RKIP +KH GV+DPL Q  ++E+ L    N PP   D+Q V
Sbjct: 5   RKIPVRKHHGVRDPLKQLEQKEKKLSKVTNNPPVKKDEQQV 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,270,675
Number of Sequences: 53049
Number of extensions: 460932
Number of successful extensions: 1538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)