Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m06
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    30   1.8  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    30   1.8  
AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine re...    29   3.2  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    28   7.3  

>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
 Frame = +1

Query: 112 VQQARREQSLKSKI--NAPPKDPDDQPVPRSLTRLFSFQXXXXXXXXXXXXXXXXLDQNA 285
           + +  R+++ + +I  N  P D +  P+PR+L  L S +                LD  +
Sbjct: 403 IAKEARDRTAQDEILANLVPLDENGVPLPRALPELKSIESPLDVSVKTLDQLI--LDMYS 460

Query: 286 EHRSRNKSSVGRNPITCMKKLPGESGRDFSLRINSALKALHNPVENLDYPEDIDTEDTK 462
            +++   +   +N +T     P E   + S  + S +  LH    + +  E I  + T+
Sbjct: 461 NNKTEELNISEKNNVTSTFSEPSEKEDEASTTVISVISPLHTNATDSEILEHISEKSTE 519


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
 Frame = +1

Query: 112 VQQARREQSLKSKI--NAPPKDPDDQPVPRSLTRLFSFQXXXXXXXXXXXXXXXXLDQNA 285
           + +  R+++ + +I  N  P D +  P+PR+L  L S +                LD  +
Sbjct: 403 IAKEARDRTAQDEILANLVPLDENGVPLPRALPELKSIESPLDVSVKTLDQLI--LDMYS 460

Query: 286 EHRSRNKSSVGRNPITCMKKLPGESGRDFSLRINSALKALHNPVENLDYPEDIDTEDTK 462
            +++   +   +N +T     P E   + S  + S +  LH    + +  E I  + T+
Sbjct: 461 NNKTEELNISEKNNVTSTFSEPSEKEDEASTTVISVISPLHTNATDSEILEHISEKSTE 519


>AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein21 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 306 FVSTPVFCILIESLDFIFLVSFSNFTVFL 220
           F+S P++C+ + SL FI    F+ + +FL
Sbjct: 20  FISIPIYCLALYSLIFIKSNVFTTYRIFL 48


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 337 MKKLPGESGRDFSLRINSALKALHNPVENLDYPEDIDTEDTKGERM 474
           MKKLP  S    +   N  L A++    NLD   D D  D   E +
Sbjct: 553 MKKLPARSNGSATGSSNDELSAIYTHERNLDALRDEDDSDEHLEHL 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,775
Number of Sequences: 27780
Number of extensions: 242807
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)