Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19m01
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   0.41 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   1.3  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   3.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   5.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    23   6.7  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    23   8.8  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    23   8.8  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    23   8.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.8  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 213  HSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLH 91
            H+LRDSLK ++       + S N+   A +++     +H+H
Sbjct: 1406 HTLRDSLKDIYTLNTGADNSSDNVEENADNLFQSSVLDHVH 1446


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 148 KHSPPCFRHLVSFTDKS 98
           +H P  FRH+ S+TD S
Sbjct: 721 EHRPNAFRHMPSYTDPS 737


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 201 DSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLHC 88
           ++L    I +    SL  ++L+  S +      NHLHC
Sbjct: 93  NNLNCPDIKRYILESLQDSLLKEISSLKETSTQNHLHC 130


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 168 DCSSLSRNILRRASDIW 118
           DC +  + +LRRAS +W
Sbjct: 852 DCVNSPKPLLRRASSLW 868


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 126 RKHGGECF-SKGYCSQSLIYEEA 191
           R+HG ECF SK Y      Y +A
Sbjct: 68  REHGNECFASKRYKDAEEFYTKA 90


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 5   IWSRSKLKRTRHHEVFIILCNVHFSL 82
           IWS  KL + RH  +  +L N  F L
Sbjct: 235 IWS--KLSKVRHGRIDFVLDNAGFEL 258


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 123 CRKHGGECFSKGYCSQSL 176
           C KHG EC     CS+ L
Sbjct: 431 CAKHGVECAPPQTCSRLL 448


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 66  MCILVYGNSEDDLSVKETRCRKHGGECFSKG 158
           +CIL YG  ED              E FS+G
Sbjct: 589 LCILEYGIVEDQSMKSNPDLNSFSKELFSRG 619


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 45  KFLLFCAMCILVYGNSEDDLSVK 113
           KFL F    IL  GN  +DL  K
Sbjct: 930 KFLSFFKTTILTSGNENNDLKSK 952


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,753
Number of Sequences: 5004
Number of extensions: 18867
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)