Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19l07
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 274 1e-74
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 85 2e-17
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 33 0.065
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 31 0.26
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.35
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.8
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 2.4
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 4.3
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 7.4
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 9.8
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 274 bits (672), Expect = 1e-74
Identities = 126/210 (60%), Positives = 167/210 (79%), Gaps = 1/210 (0%)
Frame = +2
Query: 59 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 238
G+R +L+GPPG+GKGTQAP +++KY + HL+TGDMLR++V+ ++LG+ KK+MD+G LV
Sbjct: 3 GMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLV 62
Query: 239 SDEMVVDMI-DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 415
SD++V MI D+ L+ PECKNGF+LDGFPRTV QAEKL LL + K L+ V+E ++D
Sbjct: 63 SDDIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDE 122
Query: 416 LLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQ 595
LLVRRITGRL+HP SGRSYH EF+PPK PM DDVTGE LI+RSDDN +AL+KRL TYH Q
Sbjct: 123 LLVRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHEQ 182
Query: 596 TVPLVDYYMRKGLHWRVDASKAADDVFNKI 685
T P+V++Y +KG VDA++ + V+ +I
Sbjct: 183 TTPVVEFYKKKGKWAAVDAAQKPEQVWEQI 212
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 84.6 bits (200), Expect = 2e-17
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 4/205 (1%)
Frame = +2
Query: 74 LLGPPGSGKGTQAPRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 247
+LG PG+GKGTQ RL EK+ H+S GD LR E + GS G +K+ + +GK+V E
Sbjct: 7 VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66
Query: 248 MVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 421
+ + +++ + + K + FL+DGFPR + Q E + + K AL F +
Sbjct: 67 ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL----YFRCGQETM 122
Query: 422 VRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTV 601
++R+ R SGRS DDN+E++KKR TY ++
Sbjct: 123 LKRLIHR--GKTSGRS-------------------------DDNIESIKKRFVTYTKASM 155
Query: 602 PLVDYYMRKGLHWRVDASKAADDVF 676
P+V+Y + +DA + D VF
Sbjct: 156 PVVEYLKSQNRLITIDAEQDPDAVF 180
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 32.7 bits (71), Expect = 0.065
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Frame = +2
Query: 41 PDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLS--TGDML----RAEVSSGSDLGR 202
PDE P + ++GPPG+GK T L +Y +S TG + + + +
Sbjct: 68 PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLECPN 127
Query: 203 RLKKVMDEGKLVSDEMVVDMIDKN----LDQPECKNGFLLDGFPRTVPQAEKLDDLLAKR 370
L ++D K+ ++V+ +ID N ++ E N G PR + L DL K
Sbjct: 128 DLSSMIDVAKIA--DLVLLLIDANFGFEMETMEFLNILAPHGMPRIMGVLTHL-DLFKKT 184
Query: 371 KTALDA 388
T +A
Sbjct: 185 STLREA 190
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 29 TKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEK 130
T + P P V++GP GSGK T A + EK
Sbjct: 4 TPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEK 37
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 110 APRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 286
+P L C S +MLR D G +K++ E + S ++D+++ QP
Sbjct: 183 SPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP 241
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 53 PLGIRAVLLGPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEG 229
P GI ++ GPPG+GK A + E L G + ++++ S+ L+K +E
Sbjct: 258 PRGI--LMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESE--SNLRKAFEEA 313
Query: 230 KLVSDEMV-VDMIDKNLDQPECKNG 301
+ S ++ +D ID + E NG
Sbjct: 314 EKNSPAIIFIDEIDSIAPKREKTNG 338
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/72 (25%), Positives = 28/72 (38%)
Frame = +2
Query: 59 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 238
G+R G P AP EK TGD+ +E+S+ + + +D G +
Sbjct: 171 GVRKSKAGAPSDPSSVHAPSSLEKPA----GTGDLPSSEISTKAPASTTVSSSVDPGTIN 226
Query: 239 SDEMVVDMIDKN 274
D + D N
Sbjct: 227 EDSSMKDHTTSN 238
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 266 DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVI-EFGIEDSLLVRRIT 436
++N +QP G GF R++PQ ++L ++ + L+ ++ + G D L + IT
Sbjct: 232 NENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAIT 289
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 4.3
Identities = 27/103 (26%), Positives = 47/103 (45%)
Frame = +2
Query: 107 QAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 286
+AP+L+EKY +C + T L + +G + VMDE + + ++ D L
Sbjct: 159 KAPKLREKYDMC-IGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC 217
Query: 287 ECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 415
N F T+P ++++ LAK T I G++D+
Sbjct: 218 TSSN-ICKSLFSATIP--SRVEE-LAKVVTVDPIRIIVGLKDA 256
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 146 LSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV-VDMIDKNLDQPECKNGFLLDGFP 322
L TG ++ V + G K+ + K + ++ +++++ N+D PE N F
Sbjct: 211 LMTGKKIKGTVLIDAANGVGAAKIKELAKYIDPKLFPIEIVNDNIDNPELLNNSCGADFV 270
Query: 323 RT 328
RT
Sbjct: 271 RT 272
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 143 DKHNTFLSDEEPESPYRIQEGQVARPLFLKD 51
D H++ L+DE ES R+QE + + F+ D
Sbjct: 271 DPHSSSLADEYRESNKRLQESKESCARFILD 301
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 155 QWIGDKHNTFLSDEEPESPYRIQEGQVARPLFLKD 51
QW+G DE+P R+Q+ A P+FL D
Sbjct: 63 QWLGWCGQEIPEDEKPMIIQRLQDECSAIPVFLDD 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,295
Number of Sequences: 5004
Number of extensions: 66541
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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