Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19k22
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 0.67
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 3.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 3.6
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 4.7
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 24 4.7
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 24 4.7
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 6.3
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 8.3
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 0.67
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 168 YVQNIPTYCLAHWWRCPVLNRSLCEWA 88
Y+QNIP +RC ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 3.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 268 RDTRWTVIINFRLI 309
RD WT+I+NF L+
Sbjct: 481 RDLNWTIILNFLLL 494
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 91 PLTEAAI*NGTTPPMSQAVSRYILDVTPFQCLISNNGLVSPELL 222
P+T +++ N +TP S V +T + L S+ + S +L
Sbjct: 563 PITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVL 606
Score = 23.8 bits (49), Expect = 6.3
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 91 PLTEAAI*NGTTPPMSQAVSRYILDVTPFQCLISNNGLVSPELL 222
P+T +++ N +TP S ++ +T L S+ + S +L
Sbjct: 383 PITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSSIL 426
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 91 PLTEAAI*NGTTPPMSQAVSRYILDVTPFQCLISNNGLVSPELL 222
P+T +++ N +TP S V +T L S+ + S +L
Sbjct: 2399 PITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVL 2442
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 91 PLTEAAI*NGTTPPMSQAVSRYILDVTPFQCLISNNGLVSPELL 222
P+T +++ N +TP S +V +T L S+ + S L
Sbjct: 983 PITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTAL 1026
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 91 PLTEAAI*NGTTPPMSQAVSRYILDVTPFQCLISNNGLVSPELL 222
P+T + + N +TP S V +T L S+ + S +L
Sbjct: 1199 PITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSIL 1242
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 24.2 bits (50), Expect = 4.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 99 RGCDLERDNATNEPSSKSVYFGRNTVPVSDLE*WAREPG 215
RG E+DN SS+S + V VS+L R PG
Sbjct: 3 RGKCKEKDNGLKRISSESEVWNFLDVTVSELNKQKRSPG 41
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.2 bits (50), Expect = 4.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 200 PLFEIRHWNGVTSKIY 153
PLF ++ WN +TS +
Sbjct: 2155 PLFSMQRWNSITSMFF 2170
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 130 PMSQAVSRYILDVTPFQCLISNNGLVSPELLCYY 231
P A SRYILD Q + + + + +P L+ YY
Sbjct: 428 PACTAYSRYILDTGAAQDVAALDFVQAPCLIGYY 461
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 169 LRPKYTDLLLGSLVALSRSKSQP 101
L P++TD+ LG L + SQP
Sbjct: 370 LDPEFTDIFLGVLTEVCLDPSQP 392
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 23.8 bits (49), Expect = 6.3
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 209 LTSPLFEIRHWNGVTSKIYRLTAWLIGGVVPF*IAASVSGRSRNFV*AKKRL 54
LTS F + + G S IY +T G + F I S SGR + + ++L
Sbjct: 646 LTSAEFVVMNPKGSPSSIYVVTGTYRGMTLLFRIDPSSSGRFSAYFESSRQL 697
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +1
Query: 103 AAI*NGTTPPMSQAVSRYILDVTPFQCLISNNGLVSPELLCYYS 234
++I + P + V +D + C I+NN + P + +Y+
Sbjct: 442 SSIYSNDVPAIPPNVPYTFVDPYTYACYINNNSYLPPSYMDFYT 485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,061
Number of Sequences: 5004
Number of extensions: 21625
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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