Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19k12
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.8  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   4.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   8.4  

>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 213 NIPNPHLRINRSRCQSFYGL 154
           N+PNP L  +RS  QS YG+
Sbjct: 150 NVPNPSLSASRSWYQSGYGI 169


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 235 STQTAEPVHSPPG-FAGAHRHQNVNTATHLEA*GGV*YRGASTA 363
           ST T  P  +  G F G     N NTAT+    GG  +  A+TA
Sbjct: 480 STATTAPKPAGTGLFGGLGAGANTNTATNATGTGGSLFGNANTA 523


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 546 VSIVINIAVMLYAAMHLSANTSPMVEWVPVTGDGSERNAELQYLK 680
           + I ++ +   YAA  + ++TS +   +  TGDG++   E  Y++
Sbjct: 265 IPIFLDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 667 SSAFLSEPSPVTGTHSTIGEVFADRCIAAYSITA 566
           SS ++S   PV  TH T      D  I  Y+ITA
Sbjct: 61  SSHYISTIYPVNKTHHTEYTTLTDGSIDTYTITA 94


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 624  WVPVTGDGSERNAELQYLKREITRNDT---DRLIEPMI 728
            W P+    S  N E+Q ++ + T ND+   +++ +PM+
Sbjct: 1069 WNPLADSFSASNVEMQCVQAKFTYNDSNAYEKVFKPML 1106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,654
Number of Sequences: 5004
Number of extensions: 64929
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)