Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19k11
(228 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 0.36
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 0.36
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 23 0.48
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 1.1
AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase prec... 22 1.1
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 2.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 20 3.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 20 3.4
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 20 4.4
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 20 4.4
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 19 5.9
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 19 5.9
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 19 5.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 5.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 19 5.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 19 7.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 19 7.8
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 23.4 bits (48), Expect = 0.36
Identities = 5/19 (26%), Positives = 14/19 (73%)
Frame = -2
Query: 224 FFINSFIAAHSHWFVVETL 168
+F+ F+ +S+WF+++ +
Sbjct: 225 YFVPLFLIIYSYWFIIQAV 243
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 23.4 bits (48), Expect = 0.36
Identities = 5/19 (26%), Positives = 14/19 (73%)
Frame = -2
Query: 224 FFINSFIAAHSHWFVVETL 168
+F+ F+ +S+WF+++ +
Sbjct: 101 YFVPLFLIIYSYWFIIQAV 119
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 23.0 bits (47), Expect = 0.48
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 128 TLRLGYKSFLSYNIKFRPRTNE 193
T + YK S NI RP TNE
Sbjct: 284 TYKTLYKQMWSQNITERPTTNE 305
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 25 TTVNTARL*HCRGRLSPRVT--AWPGDTTAE*SEVP 126
TTV+ A R ++PR AWPGD+ +P
Sbjct: 897 TTVSLAVDTVARSNVTPRSPGRAWPGDSDIRQRPIP 932
>AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase
precursor protein.
Length = 156
Score = 21.8 bits (44), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 213 FIYCCSFSLVRGRNFIL*LRKLLYPKRNVRDF 118
FI+ SLVR R F + L K+L R +F
Sbjct: 22 FIFLYFNSLVRFRRFTIELDKVLESPRGKYEF 53
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 122 TSDYSAVVSPGHAVTRGL 69
T +YS GHA+ +GL
Sbjct: 260 TYNYSMYWGQGHAILKGL 277
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.2 bits (40), Expect = 3.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 36 IHGCRCRT 13
IHG RCRT
Sbjct: 204 IHGYRCRT 211
Score = 19.4 bits (38), Expect = 5.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 64 RLSPRVTAWPGDT 102
RL P+VTA G+T
Sbjct: 523 RLIPKVTAVAGET 535
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.2 bits (40), Expect = 3.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 36 IHGCRCRT 13
IHG RCRT
Sbjct: 204 IHGYRCRT 211
Score = 19.4 bits (38), Expect = 5.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 64 RLSPRVTAWPGDT 102
RL P+VTA G+T
Sbjct: 523 RLIPKVTAVAGET 535
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 19.8 bits (39), Expect = 4.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 182 VVETLYYNLESFYTPSVMFG 123
+VETL + +Y P FG
Sbjct: 281 IVETLANFMRFYYNPFTPFG 300
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 19.8 bits (39), Expect = 4.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 182 VVETLYYNLESFYTPSVMFG 123
+VETL + +Y P FG
Sbjct: 281 IVETLANFMRFYYNPFTPFG 300
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 19.4 bits (38), Expect = 5.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -2
Query: 224 FFIN---SFIAAHSHWFVVETLYYN 159
+F+N S IAA +H F TLY N
Sbjct: 77 YFLNAKVSEIAALNHKFSSVTLYRN 101
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 19.4 bits (38), Expect = 5.9
Identities = 9/43 (20%), Positives = 20/43 (46%)
Frame = -2
Query: 188 WFVVETLYYNLESFYTPSVMFGTSDYSAVVSPGHAVTRGLNRP 60
W ++ ++ S S + D +++++PG+ G N P
Sbjct: 29 WLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSP 71
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 19.4 bits (38), Expect = 5.9
Identities = 9/43 (20%), Positives = 20/43 (46%)
Frame = -2
Query: 188 WFVVETLYYNLESFYTPSVMFGTSDYSAVVSPGHAVTRGLNRP 60
W ++ ++ S S + D +++++PG+ G N P
Sbjct: 29 WLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSP 71
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.4 bits (38), Expect = 5.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 137 SVMFGTSDYSAVVSPGHAVTRGLNRPRQCQSL 42
S+M + V+SPG ++ ++ C SL
Sbjct: 900 SIMAMSESSKKVLSPGELLSSCVSNDGGCSSL 931
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 19.4 bits (38), Expect = 5.9
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = -1
Query: 150 LLYPKRNVRDFRLLCRCIPRPCGDPRAQPSSTVSKPCCIHGCRC 19
L+ P+RNVR + R A +S++ P + C
Sbjct: 906 LIRPERNVRQSMMPTRYSTTKSSAVTATNASSMIAPVALTAATC 949
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 158 SYNIKFRPRTNENE 199
SYN RP NE+E
Sbjct: 65 SYNTLERPVANESE 78
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 158 SYNIKFRPRTNENE 199
SYN RP NE+E
Sbjct: 65 SYNTLERPVANESE 78
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,198
Number of Sequences: 438
Number of extensions: 1416
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3659655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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