Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19k07
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 67 3e-12
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 63 5e-11
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 50 5e-07
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 45 1e-05
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 42 9e-05
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 36 0.008
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.70
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 29 0.93
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 27 2.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 2.8
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 27 2.8
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 8.7
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 8.7
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 66.9 bits (156), Expect = 3e-12
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Frame = +3
Query: 132 SPLKIVRGIAQFMYDETGERYLDCINNV--AHVGHCHPHVVEA-GRNQMSLISTNNRYLH 302
+P IVR +YDE LD + A +GH HP + +N L+ + +L
Sbjct: 32 APKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLS 91
Query: 303 DELVILAQRLVNTLPESLSVCFFVNSGSEANDLALRMARIHTKKKDVITLDHAYHG 470
+V LA L + LP+ L F+++G EAN+ ALRMA+++T K + + ++HG
Sbjct: 92 PPVVQLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHG 147
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 62.9 bits (146), Expect = 5e-11
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 14/213 (6%)
Frame = +3
Query: 93 KHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA--HVGHCHPHVVEAGRNQ 266
K GA + P+ +G +++D+ G +Y+D + VA +GH HP V +Q
Sbjct: 41 KKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQ 100
Query: 267 MS-LISTNNRYLHDELVILAQRLVNTLPESLSVC-----FFVNSGSEANDLALRMAR--- 419
S L+ ++N + ++ + L+ + N+L ++ + FF N G+EAN+ AL+ AR
Sbjct: 101 CSKLVHSSNLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANCGTEANETALKFARKAA 160
Query: 420 ---IHTKKKDVITLDHAYHGHLTTMIDISPYKFNLPGGPEKPDWVHVAPVPDVYRGKYTH 590
K ++ ++++HG + I+ P+ +PDV + Y
Sbjct: 161 FEKYGEGKSQIVYFNNSFHGRSLGSLSIT-------ANPKYKRGFQPL-LPDVVQAVYND 212
Query: 591 PADSESVEEVGRMYADEVGNICNEIKNKNGGVC 689
PA S+E+ D+ + E GG+C
Sbjct: 213 PA---SIEQ---FVNDKTAAVIVEPVQGEGGIC 239
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 49.6 bits (113), Expect = 5e-07
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Frame = +3
Query: 135 PLKIVRGIAQFMYDETGERYLDCINN--VAHVGHCHPHVVEAGRNQMSLISTNNR--YLH 302
P +VR ++Y E G R +D VA +GH + V++A Q + + + +
Sbjct: 28 PPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSN 87
Query: 303 DELVILAQRLVNTLPESLSVCFFVNSGSEANDLALRM-----ARIHTKKK-DVITLDHAY 464
+ LA LV+ P+ + +F NSGSEA + L++ + K++ +I Y
Sbjct: 88 EPADKLANLLVSEHPDVFARAYFANSGSEAVETCLKLILQYWQLVGEKQRCHIIARKQGY 147
Query: 465 HGHLTTMIDISPYKFNLP--GGPEKPDWVHVAPVPDVYRGKYTHPADSESVEEVGRMYAD 638
HG+ + + K G HV+P + YR K E V + + D
Sbjct: 148 HGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFE-YRYKENGETTEEYVARLAKELED 206
Query: 639 EVGNICNEIKNKNGGVCAFIAESLQ-SCGGQIIPPDG 746
E+ + E V AF+AE++ +C G P G
Sbjct: 207 EILRVGPE------KVAAFVAETVSGACTGCATPVPG 237
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 168 MYDETGERYLDCINNVAHV--GHCHPHVVEAGRNQMSLISTNNR-YLHDELVILAQRLVN 338
++D G YLD ++ + V GHCHP ++EA Q ++ ++R + +D+ A+ +
Sbjct: 43 VWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSRAFYNDKFGPFAKYITE 102
Query: 339 TLPESLSVCFFVNSGSEANDLALRMARIHTKKKDVITLDHA 461
+ + +N+G+EA + A ++AR+ K I D A
Sbjct: 103 YFGYEMVIP--MNTGAEAVETACKLARLWGYKAKKIPTDEA 141
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 41.9 bits (94), Expect = 9e-05
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +3
Query: 135 PLKIVRGIAQFMYDETGERYLDCINNVAH--VGHCHPHVVEAGRNQMSLISTNNRYLHDE 308
P+ I G + D G Y D +N + GH +P + +A I +
Sbjct: 52 PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGISLGGTTTC 111
Query: 309 LVILAQRLVNTLPESLSVCFFVNSGSEANDLALRMARIHTKKKDVITLDHAYH-GHLTTM 485
+ A+ L + S+ F NSG+EAN A+ AR T K+ VI + YH G L+
Sbjct: 112 ELNYAEALKSRFL-SIEKIRFCNSGTEANITAIIAARKFTGKRAVIAMHGGYHGGPLSFA 170
Query: 486 IDISPYKFN 512
ISPY +
Sbjct: 171 HGISPYNMD 179
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.008
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Frame = +3
Query: 135 PLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPHVVEAGRN-QMSLISTNN----R 293
P+ + I ++ D G LD + +A + G+ +P +++A ++ +++ I N
Sbjct: 52 PVDYEKSIGNYLVDLDGNVLLDVYSQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGN 111
Query: 294 YLHDELVILA-QRLVNTLPESLSVCFFVNSGSEANDLALRMARIH 425
Y E +A + + P+ +F SGS+AN++A ++A +H
Sbjct: 112 YPPKEWARVAYEGAIKYAPKGQKYVYFQMSGSDANEIAYKLAMLH 156
Score = 26.2 bits (55), Expect = 5.0
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 384 SEANDLALRMARIHTKKKDVITLDHAYHGHLTTMIDISPYK-FNLPGGPEKPDWVHVAPV 560
+E N+ L A + + V++ H++HG L + + K + G P P W P
Sbjct: 170 AEENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSKPVHKLGMPAFP-W----PQ 224
Query: 561 PDVYRGKYTHPADSESVEEVGRMYADEVGNICNEIKNKNGGVCAFIAESLQSCGG 725
D KY P + E VEE + + + + N + V A I E +QS GG
Sbjct: 225 ADFPALKY--PLE-EHVEENAKEEQRCIDQVEQILTNHHCPVVACIIEPIQSEGG 276
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 144 FSRGKNGKTVGTPLQHVSREVEWFQIWALIVNKPL*TTV*SYL 16
+S KN TVG LQ ++ V W I LIVN+P + S+L
Sbjct: 199 YSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFL 240
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 28.7 bits (61), Expect = 0.93
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 14/205 (6%)
Frame = +3
Query: 174 DETGERYLDCI---------NNVAHVGHCHPHVVEAGRNQMSLISTNNRYLHDELVILAQ 326
DE G +LD I NN +V C +A M IS N +
Sbjct: 85 DEKGTEHLDLIGGVGVVTVGNNNQYVWDCLQKCFDAKLYMMGAISYRNL-----AAAFGR 139
Query: 327 RLVNTLP-ESLSVCFFVNSGSEANDLALRMARIHTK----KKDVITLDHAYHGHLTTMID 491
+ P + L+ + G+EAN+ +++ R+ T+ KK ++ +++HG T +
Sbjct: 140 NMALLSPGQKLTRTWTATGGAEANEGVIKLIRLATRYKPNKKKFLSTLNSFHGKTTGAVF 199
Query: 492 ISPYKFNLPGGPEKPDWVHVAPVPDVYRGKYTHPADSESVEEVGRMYADEVGNICNEIKN 671
+ GG EK W KY PA + V+ V A+ + ++
Sbjct: 200 L--------GGKEK--WQ-----------KYQSPAPFD-VDYVPYGDAEAL-----QVAL 232
Query: 672 KNGGVCAFIAESLQSCGGQIIPPDG 746
+G +FI E +Q GG I+PP G
Sbjct: 233 SSGMYRSFIVEPIQGEGGVIVPPPG 257
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 387 EANDLALRMARIHTKKKDVITLDHA 461
E N LAL R +KKKDVIT+DH+
Sbjct: 348 EENLLALAAKR--SKKKDVITVDHS 370
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 251 LNNMWMTMADMGNVVDAVEIPFAGFVIHELCYSSHYFQGGRTEKQLARRSNMFLAK 84
L+N+W + + D V A + I LC S Y+Q TE + RSN+ + K
Sbjct: 1432 LHNLWKPHLQLNCLSDEV----AQYYI-TLCKGSFYYQMRNTEDMVISRSNLDIQK 1482
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 111 CQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 218
C + F S +I ++ + + E G+R ++C+NN++
Sbjct: 422 CVVAFEFSSEEIPSNLSNY-FQEVGDRTIECLNNIS 456
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 27 IQSFTMAYLQSMPKSETIQLR-EKHVGAACQLFFR 128
+ F+ AY++ PK E +QL+ + V Q FF+
Sbjct: 997 LNEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFK 1031
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 378 SLRRSKRTMILVMYSRAFVLE*LARREDSGCLSILETFDFYQPQQHVDDNGRHG 217
+LR + R +L+ S ++ L R D+G L F F P +D N R G
Sbjct: 393 ALRYNLRISLLLTASSDTTVK-LWSRGDAGAFECLHVFSFSSPVNCIDWNLREG 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,139
Number of Sequences: 5004
Number of extensions: 66318
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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