Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19k07
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 213 VAHVGHCHPHVVEAGRNQMSLISTNNRY-LHDELVILAQRL 332
           + H  H HPH  E    Q+  I  N  +   +EL+++ + +
Sbjct: 459 IGHTPHHHPHPPETPGPQVETILQNACFCARNELMMILKEI 499


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 111 TPLQHVSREVEWFQIWALIV 52
           TPL  + R V+WF+   L+V
Sbjct: 48  TPLDRLQRVVDWFRKNMLLV 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 453  DHAYHGHLTTMIDISP 500
            D  YHG  +T  DISP
Sbjct: 1816 DFIYHGTSSTSSDISP 1831


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 453  DHAYHGHLTTMIDISP 500
            D  YHG  +T  DISP
Sbjct: 1812 DFIYHGTSSTSSDISP 1827


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 138 RGKNGKTVGTPLQHVSREVEW 76
           RGKN   +G  L      VEW
Sbjct: 186 RGKNVVDIGVDLSEFYTSVEW 206


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 706 LSAMKAQTPPFLFLISLQILPTSSAYIRPTSSTDSESAG*VYFP 575
           L+ +KA+TP  L   S     T +    P  S  + +AG   FP
Sbjct: 30  LTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAGGALFP 73



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 492 ISPYKFNLPGGPEKPDWVHVAPVPDVYRGKYTHPADSE 605
           +SPY +  P  PE+ + +H       ++ +Y  P++ +
Sbjct: 322 VSPYGYVKPISPEQEELIHRLV---YFQNEYEQPSEED 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,041
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)