Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19j17
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.73 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.73 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 326 FLTSQGRYDEALVVLKKIYACNTGDRAENFPVKKLI 433
           FL SQ  Y+  L+++  +YA  T    ENF   K I
Sbjct: 674 FLFSQ-LYNALLILISTVYAVKTRKIPENFNESKFI 708


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 326 FLTSQGRYDEALVVLKKIYACNTGDRAENFPVKKLI 433
           FL SQ  Y+  L+++  +YA  T    ENF   K I
Sbjct: 764 FLFSQ-LYNALLILISTVYAVKTRKIPENFNESKFI 798


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 533 TMRLFYLVIIIYMTGSGFILWLPYVMNNLFYVLKIN 640
           T+++  ++I ++     FI W PY + +L+Y +  N
Sbjct: 258 TLKMTVIIIAVF-----FICWTPYYVMSLWYWIDRN 288


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 115 SMQQKRSQQTLIELGSDVYLSYPIYNPISEHPLP 14
           +++++R ++  I +  D  L+ P  NP+S  P P
Sbjct: 416 AVEEERQREYGIRVERDPILTPPSSNPVSPVPSP 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,934
Number of Sequences: 438
Number of extensions: 5002
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)