Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19j08
         (175 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    20   3.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   5.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   7.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   7.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     18   9.6  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 42

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 9  NIKK*PNDIFYMWILHGNIIYKIYKCH 89
          ++KK     F  + LH  I+ K  KC+
Sbjct: 9  SLKKDFGTYFQQYCLHHKILIKKNKCN 35


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 87 DTCKSCKLYFHVKSTC 40
          D+C  CK    + S C
Sbjct: 41 DSCHKCKYGIAMSSAC 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/17 (23%), Positives = 11/17 (64%)
 Frame = -2

Query: 75  SCKLYFHVKSTCRRCHL 25
           +C++  +++  C+ C L
Sbjct: 228 NCEIDMYMRRKCQECRL 244


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/17 (23%), Positives = 11/17 (64%)
 Frame = -2

Query: 75 SCKLYFHVKSTCRRCHL 25
          +C++  +++  C+ C L
Sbjct: 25 NCEIDMYMRRKCQECRL 41


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 48  STCRRCHLVIFLYFR 4
           +TC   H  +FL FR
Sbjct: 371 TTCMGDHKPVFLEFR 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,020
Number of Sequences: 438
Number of extensions: 427
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)